Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00949 ATGGAAAACCCTCCAAAGCTTCCATTGAAGTTTCAAGTCCTTCTCCGTCTCCACTCGTTCGCCACCTCCATCGGTCGTCGCCCTAACATGACTGTCAACCGTTGCTTAACAAACCTCTTCGACCTCAAATTCTCTCCTTCTTCTAAACCCAACAACGGCGTTTCGACTCGCGACATCGTTTTCGACCGTGCTCGCAATCTCTGGTTTCGTCTCTTTGTTCCGTCTTCGGTTTCTGATGATGTTAGTCTACCAGTTGTTGTGTACTTTCATGGCGGCGGGTTTGTGTTTTTTTCTGCTAGTTCGATGTCGTACGATGATCTTGGTCGGAGACTTGCACGTGACCTCCGTGTTGTGGTTGTGTCGGTAAATTATCGTCTCTCTCCCGAGCACCGGTATCCACTTCCCTATGAAGATGGATTTGATGGTTTGAAATTTCTCGATGAAATGGGCTTTGATTCTGTCGTTTTTCCGGCGAAAGCTGATCTTGGTCGGTGTTTTCTCGCCGGAGATAGTGCCGGTGGCAACTTGGCCCACCACGTCGCCGTCAGAGCAGCTGGATATGACTTCAAGAAGGTGAACATCAAAGGCTTAATAGCAATACAACCATTTTTTGGTGGAGAGGAGAGAACAAATTCAGAGGTCCAATTCAGCAAATCCCCAATGTTAAGCTTGGAACAAGCTGATTGGTACTGGAAAGCATTTTTGCCAGATGGGTCCAATAGAAACCACCCAGCTGCACACGTGTTCGGCCCCGGTGCCGGAGACCTTCCCGACGAGAAGTTTCCGATGACGCTGCTAATTGTGGGAGGACGAGACCAGTTACGAGATTGGGGGATGAAGTACTACGAGTGGCTTAAAGAGAGTGATAAAGAAGTGGATTTGGTTGAATATCCAAATGCCATCCATGGATTTTATGCTGTTCCTCAGCTCAAGGATTGTTCTTTGCTCATTAGAGATGTAAATGATTTCATCCAGAAATGTTTGTTAGTATAA 993 46.93 MENPPKLPLKFQVLLRLHSFATSIGRRPNMTVNRCLTNLFDLKFSPSSKPNNGVSTRDIVFDRARNLWFRLFVPSSVSDDVSLPVVVYFHGGGFVFFSASSMSYDDLGRRLARDLRVVVVSVNYRLSPEHRYPLPYEDGFDGLKFLDEMGFDSVVFPAKADLGRCFLAGDSAGGNLAHHVAVRAAGYDFKKVNIKGLIAIQPFFGGEERTNSEVQFSKSPMLSLEQADWYWKAFLPDGSNRNHPAAHVFGPGAGDLPDEKFPMTLLIVGGRDQLRDWGMKYYEWLKESDKEVDLVEYPNAIHGFYAVPQLKDCSLLIRDVNDFIQKCLLV 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8037575 8040748 - Cp4.1LG06g09690.1 Cpe06g00949 471729

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00949 330 Gene3D alpha/beta hydrolase 1 326 IPR029058 -
Cpe06g00949 330 SUPERFAMILY alpha/beta-Hydrolases 39 328 IPR029058 -
Cpe06g00949 330 PANTHER ACETYL ESTERASE 5 326 - -
Cpe06g00949 330 Pfam alpha/beta hydrolase fold 86 305 IPR013094 GO:0016787
Cpe06g00949 330 PANTHER ARYLACETAMIDE DEACETYLASE 5 326 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00949 - - - csv:101219808 445.662
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe02g00985 Cpe06g00949 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00949 Cpe-Chr6:8037575 Cpe11g00811 Cpe-Chr11:6572850 1.51E-114 dispersed
Cpe11g00409 Cpe-Chr11:2263302 Cpe06g00949 Cpe-Chr6:8037575 5.84E-51 dispersed
Cpe06g00949 Cpe-Chr6:8037575 Cpe02g00985 Cpe-Chr2:8921312 4.91E-116 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1719 . . . . . . . . . . Cma01g00879 . Car01g00803 . . Cpe06g00949 . . . . . . . . Cla08g00168 . Cec08g0085 Cco08g0229 . Cmu08g0162 Cre08g0149 . . . . . . . Cme09g00114 . . . . . . . . Sed11g1771 Cmo01g00921 Cmo09g01210 . . . Car09g01079 . Cpe02g00985 Bhi06g00124 Tan10g1851 Cmetu09g1418 . . . . . . . . . . . Lsi08g00164 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000161 3 6 3 2 2 10 7 9 9 7 8 9 7 7 10 8 9 1 6 8 8 5 7 8 9 11 7 4 7 3 200
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00949 Cpe_Chr06 FPKM 126.605133 129.540085 117.613091 124.449516 146.849579 151.611938 139.670258 165.048538 170.670685 168.13678
Cpe06g00949 Cpe_Chr00 FPKM 136.515793 137.552231 114.520615 115.252319 155.907135 157.108521 144.345856 172.013596 183.789474 173.830795