Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00956 ATGTCCATGCTCGCCTCCTTCTTCTACAAGGGCTTCAAGGCTGCCCAATGTAAAACGCTGCTTAAATTGACAATTCCACGGATAAAGCTGCTGAGGAATCGGAGGGAGATTCAGCTTAAGCAGATGCGCCGAGACATAGCTAAGCTTCTTGAGACAGGTCAAGAAGCGACTGCTCGCATTCGGGTAGAACATATAATCAGAGAAGAGAATATGATGGCTGCTCAGGAAATTCTCGAATTGTTTTGTGAGCTTATTGTTGTTCGTCTTCCAATTATTGAAACACAAAGGGAATGTCCTCTAGACTTGAAAGAAGCAATCTCGAGCGTGTGTTTTGCTGCTCCAAGGTGTGCTGATCTTACAGAGCTTCTCCAGCTGATAGAGCTGCTTTCTGTTCGTGCTCCTTCACCCGAGAAGAAACTGAAGCTCTTAAAGGAAATCGCCGAAGAACACGACGTAGATTGGGATCCTGCTGGAACTGAAGCCGAGTTTAACAAATCACCAGAAGATTTGCTTAATGGATCGGCACAGTTCGTCAGCGCATCAAAATTACCCCTTCCTCAAGAGAAACACAACGAAGCATACAATGCACCACAACCTGATTCTGATTCTGAATTGGACATGTTAGACTTCCCTGAAGTTCCAAAGATATCAGTATCTCCACATTCTACTATAGATCCTGGTTCTGCTTCATCGATGATCCCTCCTCCGTCAACGTCGCCACCGCCTGAAACTACTCGTGATTCATCGAAGTATTCTTGTATTCCTGAAACCCCACCAGAAGATTTACACTTGAGACGTGGGGAGGTGACACCGGACGTGTTGGCAGCTGCTCAGGCTGCTGTTGAAACCGCCGAGCGTGCTGCAGCTGCAGCTCGCTCAGCAGCTAGTTTAACAAAGGTTAGAATCGACACGCTCACAATGAAAACGAACGATCAGGACCCTGAAATTTGTTGCGAGAATCCGTTCCATGGAGCTACTACAAGTCCACCAGATCATGAACAAACATTCCACCTAAACCAACAAGATTCTATAGGGCATCATCATTCTAGCTCTATGCCATATTATTCACAAGATTCTTTCCAAGAACATCACAAAGAAAGCCCCGGTTCAGATGTTTCCGATCACCACCGGTTCGAGTCACAGAAATCGGGTTTCGACTCCTCTCCCGGTGATTCACCATCCGAACACATAACAATCCCCCATCAGCCCCAGAGGCTTCCATCGATGGACGACGACCCATACTTCTCGTACCCAAATTTATTTACATCACAGAAACCAAATCCAGGATTTGATCATTCATCAGCTGATGGTTCTTGA 1317 46.17 MSMLASFFYKGFKAAQCKTLLKLTIPRIKLLRNRREIQLKQMRRDIAKLLETGQEATARIRVEHIIREENMMAAQEILELFCELIVVRLPIIETQRECPLDLKEAISSVCFAAPRCADLTELLQLIELLSVRAPSPEKKLKLLKEIAEEHDVDWDPAGTEAEFNKSPEDLLNGSAQFVSASKLPLPQEKHNEAYNAPQPDSDSELDMLDFPEVPKISVSPHSTIDPGSASSMIPPPSTSPPPETTRDSSKYSCIPETPPEDLHLRRGEVTPDVLAAAQAAVETAERAAAAARSAASLTKVRIDTLTMKTNDQDPEICCENPFHGATTSPPDHEQTFHLNQQDSIGHHHSSSMPYYSQDSFQEHHKESPGSDVSDHHRFESQKSGFDSSPGDSPSEHITIPHQPQRLPSMDDDPYFSYPNLFTSQKPNPGFDHSSADGS 438
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8185049 8190744 + Cp4.1LG06g09620.1 Cpe06g00956 471736

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00956 438 Coils Coil 274 294 - -
Cpe06g00956 438 PANTHER IST1 FAMILY MEMBER 271 427 IPR005061 GO:0015031
Cpe06g00956 438 PANTHER REGULATOR OF VPS4 ACTIVITY IN THE MVB PATHWAY PROTEIN 1 125 - -
Cpe06g00956 438 PANTHER REGULATOR OF VPS4 ACTIVITY IN THE MVB PATHWAY PROTEIN 124 248 - -
Cpe06g00956 438 Coils Coil 32 59 - -
Cpe06g00956 438 PANTHER REGULATOR OF VPS4 ACTIVITY IN THE MVB PATHWAY PROTEIN 271 427 - -
Cpe06g00956 438 MobiDBLite consensus disorder prediction 417 438 - -
Cpe06g00956 438 PANTHER IST1 FAMILY MEMBER 124 248 IPR005061 GO:0015031
Cpe06g00956 438 Pfam Regulator of Vps4 activity in the MVB pathway 18 130 IPR005061 GO:0015031
Cpe06g00956 438 Gene3D - 127 163 IPR042277 -
Cpe06g00956 438 Gene3D - 5 126 IPR042277 -
Cpe06g00956 438 PANTHER IST1 FAMILY MEMBER 1 125 IPR005061 GO:0015031
Cpe06g00956 438 MobiDBLite consensus disorder prediction 383 401 - -
Cpe06g00956 438 MobiDBLite consensus disorder prediction 327 358 - -
Cpe06g00956 438 MobiDBLite consensus disorder prediction 316 438 - -
Cpe06g00956 438 MobiDBLite consensus disorder prediction 185 263 - -
Cpe06g00956 438 MobiDBLite consensus disorder prediction 359 382 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00956 - - - rcu:8259381 421.394
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00956 Cpe-Chr6:8185049 Cpe10g00702 Cpe-Chr10:4035204 7.44E-65 dispersed
Cpe06g00956 Cpe-Chr6:8185049 Cpe01g01779 Cpe-Chr1:13994113 1.59E-66 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1309 Blo01g01750 Blo12g00768 . Bda03g00412 Bpe02g00192 Bpe04g00378 Bma04g00389 Bma01g02532 . . . . Car01g00848 . . Cpe06g00956 . . . . . . . . Cla08g00312 Cam08g0750 Cec08g0303 . Clacu08g0461 . . . . . Cone20ag0683 . . . . . . Bda11g00852 . . . . . . . Cmo09g01216 . . . Car09g01087 . . . . . . . . . . . . . . . . Lsi08g00258 . Chy03g00282 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006306 2 1 1 2 2 1 3 1 1 1 1 1 2 1 1 1 1 2 1 1 1 1 1 1 1 1 0 3 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00956 Cpe_Chr06 FPKM 1.420543 2.287799 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
Cpe06g00956 Cpe_Chr00 FPKM 1.261062 0.432395 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0