Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00958 ATGGAGCACTACAAGGTTTTGGTCTCTTTGATCTTGCTGCTTCGTTCACTATGGCTTGTTTCTGCTAACATGGAAGGTGATGCTTTGCATAGCCTAAGAACCAGCTTGCAGGATCCTAACAATGTCTTGCAGAGTTGGGATCCCACTCTTGTCAATCCCTGTACATGGTTTCATGTTACTTGCAACAATGATAATAGTGTCATACGAGTTGATCTTGGAAACGCAGCTTTATCGGGCACACTTGTTCCACAGCTTGGCTTGCTAAAAAATTTGCAGTATCTAGAGCTCTACAGTAACAACATAAGTGGAGTAATCCCAAGTGATCTGGGAAATCTGACTAGTTTGGTGAGCTTAGATCTTTATTTGAACAGATTTTCGGGTCCAATTCCCGACACGTTAGGCAAGCTGTCAAAACTACGATTCCTCCGGCTGAACAACAACAGCTTATCAGGTCCTATTCCTATGTCATTGACTAATATCTCATCCCTTCAAGTGTTGGATCTATCGAATAACCATCTCTCGGGCGTGGTTCCAGATAACGGTTCCTTCTCCTTGTTCACCCCCATCAGTTTTGCCAACAACTTGGATCTTTGTGGCCCTGTTACCGGACGTCCTTGCCCGGGATCACCTCCGTTTTCTCCTCCTCCACCCTTTGTCCCGCCACCTCCTATATCTTCACCAGGTGGGAACAGTGCAACCGGAGCGATTGCTGGTGGCGTTGCTGCAGGCGCTGCATTACTTTTTGCAGCTCCAGCAATCGCATTTGCGTGGTGGCGTCGTAGGAAACCCCAAGAAGTTTTCTTCGACGTTCCTGCCGAAGAGGATCCGGAAGTGCATCTGGGACAGCTTAAAAGATTTTCACTGAGAGAGCTACAAGTAGCTACTGATAGTTTTAGTAACAAGAACATACTTGGTCGGGGTGGATTTGGTAAGGTCTACAAAGGTCGATTGGCAGACGGTTCGTTAGTCGCCGTAAAAAGACTCAAGGAAGAACGTACGCCTGGTGGAGAGCTGCAGTTTCAAACAGAAGTAGAGATGATCAGCATGGCTGTACATCGGAACCTGCTACGACTACGTGGATTTTGCATGACGCCAACCGAACGACTTCTTGTTTATCCGTACATGGCCAATGGAAGTGTTGCGTCTTGCTTAAGAGGTACCTTCTTTTACGTGAAAGGACTCCTGAAAGAGAAGAAGCTAGAAATGCTGGTTGACCCTGACCTTCAGAATAACTATGTCGAATCCGAGGTCGAACAGTTGATTCAAGTAGCGCTACTCTGCACACAAGGCTCCCCGATGGACCGACCGAAGATGTCGGAGGTGGTTCGAATGCTGGAAGGAGACGGGTTGGCAGAAAGATGGGATGAGTGGCAAAAGGTGGAGATTCTTCGACAAGAAATCGACCTATCGCCCCATCCGAATTCGGATTGGATTGTGGATTCAACTGAAAATCTACATGCAGTCGAGCTTTCTGGTCCGAGATGA 1485 47.34 MEHYKVLVSLILLLRSLWLVSANMEGDALHSLRTSLQDPNNVLQSWDPTLVNPCTWFHVTCNNDNSVIRVDLGNAALSGTLVPQLGLLKNLQYLELYSNNISGVIPSDLGNLTSLVSLDLYLNRFSGPIPDTLGKLSKLRFLRLNNNSLSGPIPMSLTNISSLQVLDLSNNHLSGVVPDNGSFSLFTPISFANNLDLCGPVTGRPCPGSPPFSPPPPFVPPPPISSPGGNSATGAIAGGVAAGAALLFAAPAIAFAWWRRRKPQEVFFDVPAEEDPEVHLGQLKRFSLRELQVATDSFSNKNILGRGGFGKVYKGRLADGSLVAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRGTFFYVKGLLKEKKLEMLVDPDLQNNYVESEVEQLIQVALLCTQGSPMDRPKMSEVVRMLEGDGLAERWDEWQKVEILRQEIDLSPHPNSDWIVDSTENLHAVELSGPR 494
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8196848 8203199 - Cp4.1LG06g09610.1 Cpe06g00958 471738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00958 494 SUPERFAMILY Protein kinase-like (PK-like) 276 389 IPR011009 -
Cpe06g00958 494 Pfam Protein kinase domain 299 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe06g00958 494 Pfam Leucine Rich Repeat 162 179 IPR001611 GO:0005515
Cpe06g00958 494 PANTHER LEUCINE-RICH REPEAT DOMAIN, L DOMAIN-LIKE PROTEIN-RELATED 8 385 IPR031048 GO:0004675|GO:0005102|GO:0006468
Cpe06g00958 494 ProSiteProfiles Protein kinase domain profile. 298 494 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe06g00958 494 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 8 385 - -
Cpe06g00958 494 Pfam Leucine rich repeat N-terminal domain 22 62 IPR013210 -
Cpe06g00958 494 Gene3D Phosphorylase Kinase; domain 1 267 373 - -
Cpe06g00958 494 PANTHER LEUCINE-RICH REPEAT DOMAIN, L DOMAIN-LIKE PROTEIN-RELATED 390 494 IPR031048 GO:0004675|GO:0005102|GO:0006468
Cpe06g00958 494 SUPERFAMILY L domain-like 25 186 - -
Cpe06g00958 494 Gene3D Ribonuclease Inhibitor 21 208 IPR032675 -
Cpe06g00958 494 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 390 494 - -
Cpe06g00958 494 Gene3D Transferase(Phosphotransferase) domain 1 374 465 - -
Cpe06g00958 494 ProSitePatterns Protein kinases ATP-binding region signature. 304 326 IPR017441 GO:0005524
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00958 Cpe-Chr6:8196848 Cpe14g00219 Cpe-Chr14:1241039 1.01E-171 dispersed
Cpe18g00131 Cpe-Chr18:2870576 Cpe06g00958 Cpe-Chr6:8196848 2.24E-72 dispersed
Cpe06g00958 Cpe-Chr6:8196848 Cpe01g00346 Cpe-Chr1:1971042 1.13E-167 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62484 PF00069 Pkinase 1.30E-13 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00958 K13418 - csv:101208695 652.129