Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00963 ATGGATTTTCTATGGATTTTCCTGTTCTTCCCCTGTTTCTTCACCATCGTTTCTTCTTTATCCTCTGTTTCCATTTCTGAAACTGGGAACCAGACGTTGATTTGCAGTTTGAATTCTCGATTTTCTTTGAATTGTTCTAGTTTTCCTTCTGGGATTCAAATTCCCTTCCAACCCAATGATTCTTACTCCGGGATCGTCGCCGGAGATGGGTTCTTTTGTGGGTTGAGAGATTTTCCGACCGCCGCCAAATCCGTCCTTGTTTGTTGGAGATACTCTGTAAATGGAACAAACATGGAACCCAGAGTGGTTTATAACGGCCCGAATTTGAAGGAGCTTCGAGCTGGAAATTCCCACATTTGTGGAGTTGTTAACGCCACTAATCGTCTTCAATGTTGGCAATGGCGGCGGTTCACTCGGTATTTCACTTTTGATTTCTTGTCCATTGCTGTCGGTGGTGATTTCGTTTGTGGTCTCTCTGTCGCCGGCGAGATTCGTTGCGATGGAACTGGGAATTCCGCCGCTGCCGCCTTCGGCGGCAGCGGCTACAAGGCGGTTGCTGCTGGGTTCCGGCATGTATGTGGGATTGATTTGAGGAATGAACTGGCATGTTGGGGGGTGGGAGCCGGAGAGATTCCGACCGGGGAGTTTAAATTGTTGGCTTTGGGGGATAATCGGAGCTGTGGTCTCCGGTTGAATGGGACGGCGGTTTGTTGGGGTGAAAAGAGTTTTACCTTGCCGGAGAGGTTAAAAGGGGAGTTTTTTACTGCGATTGAGGCGAAGAAAAACGTGTTTTGTGGTGTTTTGAGACGGAATTTCTCTTTACTCTGCTGGGGAAATGAAATTTTCAACCGGAATTTGTTCTCTGTTTTTGATTTTGTTCCACCTGGTTCTTGTAGATCGGAATGCCCATGTGGCCCATTAGCTAACACAGCTCAATTCTGTACTCAAACAACCATGATTTGCAAGCCTTGTGAAGAAAGACCTCCTCTTCTTCCGCCGCCGTCCCCCGCCGCACCGCCGCAGCATTCCCATCACTCCTCTGGCCAACGGTGGAGTGGCAGAATGGTGGCTCTACTTGTAGTGGGCTGCGTTGGGAGCTTGTCATTAGTACTCATTTGTTCCTTTTTTGTGTACAAATACTGTAAAAACAGAGTCTGTCGTGTTCATGATTCTGGCCCAATGGAGGATCCTGTCGGAACTAGCGGCGGCGGTGGCGGCGGCGGTGACGGCCGCCGTGATACGGCGGCCGGTCGGAAGAAGGTGTTGGAGAAGAGATTGAGCCATTTGATTAGCTTGGGAAATGGTGGGCAATTGGGCCAATTGGAGGACTTTCCACTTTCAACTCTTCTTGAAGCAACGAACAATTTCTCTGAAGAACACAAAATTGGGAATGGAAGCTTTGGATCGGTTTATAGAGGTGTGTTGAGTGATGGTCGTGAAGTAGCTATAAAACGAGCTGAATTCTCTCCAATGTGGGAGACAAAGAGACAAGAAGACAAAGACAACGCTTTCCTTAACGAGCTCGAATCATTGTCTCGCATTAGCCACAAGAATCTCGTACGTCTTCTCGGCTTCTTCGACGACACCCACGAGAGAGTATTAGTGTATGAATTCATGAGCAACGGCACACTCCACGACCATCTCCACAAGCTCCCATTCTCGTCACTTTCTGCTTCCTGGGCTCGTCGTATTGCTGTTGCACTTGATGCTGCTAGAGGAATACAGTATCTCCATGATTACCTCTCCCCACCGATCATCCACCGCGATATCAAGTCGTCGAATATCCTCCTCGACGATAGATGGACGGCGAAGGTCTCGGACTTTGGACTGTCACTGATGGGGCCAGACGATGATGCATCGCACTTGTCGTTACGTGCAGCTGGAACAGTGGGGTATATGGATCCAGAGTACTATAGGTTGCAACAGCTTACGACGAAGAGTGACGTGTATAGCTTTGGGGTTGTATTGTTAGAGCTGTTGTCGGGGTGTAAGGCGATTCACAAGAACGAGAACGGGGTGCCGAGGAACGTGGTGGATGTGGTGGTGCCCTACATTGTGAGAGATGAGATTCATAGGGTGTTGGATTTGAGAGTGCCGGCGCCAACGCCGTTTGAGATAGAGGCAGTGAAGTATGTGGGGTATTTAGCGGCTGATTGTGTTATTACGGAAGGAAGGCATAGGCCTTCTATGACGGATATTGTAAATTGTTTGGAGAGGGCCTTGGCTGCTTGTTTGGCGCCTACAACCCTCTCTAGATCTTCAACTGAGTCATCAATGTAG 2280 48.82 MDFLWIFLFFPCFFTIVSSLSSVSISETGNQTLICSLNSRFSLNCSSFPSGIQIPFQPNDSYSGIVAGDGFFCGLRDFPTAAKSVLVCWRYSVNGTNMEPRVVYNGPNLKELRAGNSHICGVVNATNRLQCWQWRRFTRYFTFDFLSIAVGGDFVCGLSVAGEIRCDGTGNSAAAAFGGSGYKAVAAGFRHVCGIDLRNELACWGVGAGEIPTGEFKLLALGDNRSCGLRLNGTAVCWGEKSFTLPERLKGEFFTAIEAKKNVFCGVLRRNFSLLCWGNEIFNRNLFSVFDFVPPGSCRSECPCGPLANTAQFCTQTTMICKPCEERPPLLPPPSPAAPPQHSHHSSGQRWSGRMVALLVVGCVGSLSLVLICSFFVYKYCKNRVCRVHDSGPMEDPVGTSGGGGGGGDGRRDTAAGRKKVLEKRLSHLISLGNGGQLGQLEDFPLSTLLEATNNFSEEHKIGNGSFGSVYRGVLSDGREVAIKRAEFSPMWETKRQEDKDNAFLNELESLSRISHKNLVRLLGFFDDTHERVLVYEFMSNGTLHDHLHKLPFSSLSASWARRIAVALDAARGIQYLHDYLSPPIIHRDIKSSNILLDDRWTAKVSDFGLSLMGPDDDASHLSLRAAGTVGYMDPEYYRLQQLTTKSDVYSFGVVLLELLSGCKAIHKNENGVPRNVVDVVVPYIVRDEIHRVLDLRVPAPTPFEIEAVKYVGYLAADCVITEGRHRPSMTDIVNCLERALAACLAPTTLSRSSTESSM 759
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9072758 9075037 + Cp4.1LG06g09590.1 Cpe06g00963 471743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00963 759 MobiDBLite consensus disorder prediction 392 415 - -
Cpe06g00963 759 Gene3D Transferase(Phosphotransferase) domain 1 539 747 - -
Cpe06g00963 759 ProSitePatterns Protein kinases ATP-binding region signature. 462 484 IPR017441 GO:0005524
Cpe06g00963 759 SUPERFAMILY RCC1/BLIP-II 86 285 IPR009091 -
Cpe06g00963 759 PANTHER OJ000114_01.11 PROTEIN 10 749 - -
Cpe06g00963 759 CDD STKc_IRAK 462 739 - -
Cpe06g00963 759 ProSiteProfiles Protein kinase domain profile. 456 741 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe06g00963 759 SUPERFAMILY Protein kinase-like (PK-like) 442 738 IPR011009 -
Cpe06g00963 759 SMART serkin_6 456 745 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe06g00963 759 Pfam Protein kinase domain 457 734 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe06g00963 759 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 10 749 IPR044815 GO:0004674
Cpe06g00963 759 ProSitePatterns Serine/Threonine protein kinases active-site signature. 585 597 IPR008271 GO:0004672|GO:0006468
Cpe06g00963 759 Gene3D Phosphorylase Kinase; domain 1 422 538 - -
Cpe06g00963 759 Gene3D - 52 316 IPR009091 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01037 Cpe-Chr1:6143192 Cpe06g00963 Cpe-Chr6:9072758 2.94E-10 dispersed
Cpe02g01181 Cpe-Chr2:10730280 Cpe06g00963 Cpe-Chr6:9072758 6.88E-07 dispersed
Cpe02g01564 Cpe-Chr2:13244466 Cpe06g00963 Cpe-Chr6:9072758 1.53E-58 dispersed
Cpe06g00963 Cpe-Chr6:9072758 Cpe09g00565 Cpe-Chr9:3899379 9.27E-69 dispersed
Cpe06g00963 Cpe-Chr6:9072758 Cpe20g00870 Cpe-Chr20:7825968 4.08E-120 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62485 PF00069 Pkinase 4.60E-44 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00963 - - bhj:120075078 1246.88