Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00964 ATGGCCGCTCTTCACCAAACCGCCGCCTCACTCCAGGCCAAACTCCTTCCAACAATCCGAATCTCCCGGACCACTCCGGCAAACCTCTCTTTCTCCGCCACTTTTCCTTCTGGAAGACTCCGCCTCGGCCAATACCGCTCTCACGGCGGCGCTAGAATGTCCGCCTCGGCTGCTGGAAGCTACGCTGCGGCGTTGGCCGAAGTCGCTGCGTCTAACAACACGCTGGATGCAACAAGCGGCGATGTCGAGAAGATCGAGAGCGTGTTCGCGGATTCGCAGGTGTTCGATTTCTTCGCGAATCCGACGATTAGCATCGAGAAGAAACTTGCGTTGGTGGATGAGATCGCGGCGTCGTCGTCTCTACTGCCGCATACGGCGAATTTCTTGAAGATCCTAGTGGACGCGAAGAGAATCGATATCGTGAAGGAAATCGTGACGGAGTTCGAATCGGTTTACAACAAAATTACGAACACGGAGCTTGCGGTGGTGAGTTCGGTTGTGGCGTTGGAGCAGCAGCATTTGGCGCAGATCGCGAAGCAGGTGCAGAAATTGAGTGGAGCTAAGAATGTGAGGATCAAGACGCAGATTGATCCGAGTCTGGTGGCTGGATTCACAGTCAGGTTTGGAAATTCTGGATCGAAACTCATTGATTTGAGCGTCAAGAAACAGCTTGAGGAAATTGCTTCTCAGCTTGATCTTGGTAATATTCAACTGGCTGTATAA 723 52.56 MAALHQTAASLQAKLLPTIRISRTTPANLSFSATFPSGRLRLGQYRSHGGARMSASAAGSYAAALAEVAASNNTLDATSGDVEKIESVFADSQVFDFFANPTISIEKKLALVDEIAASSSLLPHTANFLKILVDAKRIDIVKEIVTEFESVYNKITNTELAVVSSVVALEQQHLAQIAKQVQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIASQLDLGNIQLAV 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9084013 9084735 - Cp4.1LG06g09510.1 Cpe06g00964 471744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00964 240 Hamap ATP synthase subunit delta [atpD]. 53 233 IPR000711 GO:0015986|GO:0046933
Cpe06g00964 240 PRINTS ATP synthase delta subunit signature 57 76 IPR000711 GO:0015986|GO:0046933
Cpe06g00964 240 PRINTS ATP synthase delta subunit signature 126 137 IPR000711 GO:0015986|GO:0046933
Cpe06g00964 240 PRINTS ATP synthase delta subunit signature 137 151 IPR000711 GO:0015986|GO:0046933
Cpe06g00964 240 PRINTS ATP synthase delta subunit signature 188 203 IPR000711 GO:0015986|GO:0046933
Cpe06g00964 240 PRINTS ATP synthase delta subunit signature 206 224 IPR000711 GO:0015986|GO:0046933
Cpe06g00964 240 SUPERFAMILY N-terminal domain of the delta subunit of the F1F0-ATP synthase 55 157 IPR026015 -
Cpe06g00964 240 Gene3D - 57 149 IPR026015 -
Cpe06g00964 240 PANTHER ATP SYNTHASE DELTA CHAIN 48 239 IPR000711 GO:0015986|GO:0046933
Cpe06g00964 240 Pfam ATP synthase delta (OSCP) subunit 58 231 IPR000711 GO:0015986|GO:0046933
Cpe06g00964 240 PANTHER BNACNNG66500D PROTEIN 48 239 - -
Cpe06g00964 240 TIGRFAM ATP_synt_delta: ATP synthase F1, delta subunit 58 231 IPR000711 GO:0015986|GO:0046933
Cpe06g00964 240 ProSitePatterns ATP synthase delta (OSCP) subunit signature. 190 209 IPR020781 GO:0015986|GO:0016020|GO:0046933
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g01582 Cpe-Chr2:13335417 Cpe06g00964 Cpe-Chr6:9084013 1.16E-08 dispersed
Cpe03g00867 Cpe-Chr3:5479933 Cpe06g00964 Cpe-Chr6:9084013 1.59E-09 dispersed
Cpe06g00964 Cpe-Chr6:9084013 Cpe12g00823 Cpe-Chr12:7341391 1.91E-11 dispersed
Cpe08g00605 Cpe-Chr8:3983608 Cpe06g00964 Cpe-Chr6:9084013 1.05E-17 transposed
Cpe02g00940 Cpe-Chr2:7719502 Cpe06g00964 Cpe-Chr6:9084013 1.41E-138 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00964 K02113 - csv:101211740 379.793