Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00967 ATGCAGAACGATTTGCTTCAGCTATTCCAGCCATTTGGTGTCATAACCAAGCTTGTGATGCTTCGTGCTAAAAATCAGGCTCTTATCCAGATGCAAGATGTCCCCTCAGCAGTTAACGCTTTGCAGTTCTTTGCAAATGTTCAACCTAGCATTAGGGGGAGGAATGTTTATGTCCAGTTTTCATCACATCAAGAGCTAACTACTGCTGATCAGAATGCTCAAGGACGAGGAGATGAGCCAAATCGAATACTCTTAGTCACAATCCATCACATGCTATATCCCATTACAGTGGAAGTGCTGCATCAAGTGTTTTTCCCACATGGATTTGTGGAGAAGATCGTGACATTTCAGAAGTCAGCTGGTTTTCAGGCTCTCATACAGTATCAAACTCGCCAATGTGCTATTTCCGCTAGGACTGCACTACAGGGACGCAATATATATGATGGTTGCTGTCAGCTTGACATTCAGTTCTCCAATCTTGACGAGTTACAGGTGAACTACAACAATGAACGTTCAAGGGATTTCACAAATCCTAGCCTGCCTTCTGAACCAAAAGGCCGGTCATCTCAACAGCCTGGATATGGTGATGCGGGAGGCATGTATGCACTTCAAGCATCTGGAGCAGGACCAGTTGGCTTTCCACAGATGGCCAATGCGGCTGCTGTTGCTGCTGCATTTGGAGGAGGTTTGCCACCTGGTGTTAGCGGGACTAACGACAGGTGTACAGTCCTCGTGTCCAATCTGAATCCTGATAGAATAGATGAAGACAAGCTTTTTAACCTTTTCTCCATATACGGTAACATTGCAAGAATTAAGCTTCTCCGGAATAAACCTGATCATGCACTTGTTCAGATGGGAGATGGGTTCCAGGCAGAATTAGCTGTGCACTTCTTGAAGGGAGCAATGTTGTTTGGCAAGAGATTGGAGGTCAACTTCTCAAAGCATCCTAACATTACACAAGGGGCTGACACTCATGAATATGCTAACTCAAATCTTAATCGTTTTAACCGAAATGCTGCAAAGAACTACCGCTACTGCTGCTCCCCAACAAAGATGATTCACATTTCATCGTTATCCCAGGAAGTGACTGAAGAAGAAATAGTGAATCTCCTCGAGGAGCACGGGCCGATCATCAACACCAAGCTCTTTGAGATGAACGGGAAGAAACAGGCACTCATCATGTTTGACACTGAGGAGCAGGCCACTGAAGCTCTTGTTTGCAAGCACGCTAGTTCGCTTAGTGGGTCGATCATTCGCATTTCGTTTTCCCAGCTGCAGAGTATATGA 1287 45.3 MQNDLLQLFQPFGVITKLVMLRAKNQALIQMQDVPSAVNALQFFANVQPSIRGRNVYVQFSSHQELTTADQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFFPHGFVEKIVTFQKSAGFQALIQYQTRQCAISARTALQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPSLPSEPKGRSSQQPGYGDAGGMYALQASGAGPVGFPQMANAAAVAAAFGGGLPPGVSGTNDRCTVLVSNLNPDRIDEDKLFNLFSIYGNIARIKLLRNKPDHALVQMGDGFQAELAVHFLKGAMLFGKRLEVNFSKHPNITQGADTHEYANSNLNRFNRNAAKNYRYCCSPTKMIHISSLSQEVTEEEIVNLLEEHGPIINTKLFEMNGKKQALIMFDTEEQATEALVCKHASSLSGSIIRISFSQLQSI 428
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9131201 9139335 + Cp4.1LG06g09550.1 Cpe06g00967 471747

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00967 428 TIGRFAM hnRNP-L_PTB: hnRNP-L/PTB/hephaestus splicing factor family 3 424 IPR006536 GO:0003723|GO:0005634|GO:0006397
Cpe06g00967 428 Pfam RRM-like domain 79 158 IPR021790 -
Cpe06g00967 428 MobiDBLite consensus disorder prediction 171 189 - -
Cpe06g00967 428 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 224 328 - -
Cpe06g00967 428 SMART rrm1_1 85 154 IPR000504 GO:0003723
Cpe06g00967 428 SMART rrm1_1 352 421 IPR000504 GO:0003723
Cpe06g00967 428 SMART rrm1_1 242 311 IPR000504 GO:0003723
Cpe06g00967 428 MobiDBLite consensus disorder prediction 171 194 - -
Cpe06g00967 428 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 355 416 IPR000504 GO:0003723
Cpe06g00967 428 PANTHER MATRIN 3/NUCLEAR PROTEIN 220-RELATED 2 427 - -
Cpe06g00967 428 CDD RRM4_PTBPH3 344 422 - -
Cpe06g00967 428 Gene3D - 82 184 IPR012677 -
Cpe06g00967 428 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 351 425 IPR000504 GO:0003723
Cpe06g00967 428 PANTHER POLYPYRIMIDINE TRACT-BINDING PROTEIN HOMOLOG 3 2 427 - -
Cpe06g00967 428 SUPERFAMILY RNA-binding domain, RBD 239 422 IPR035979 GO:0003676
Cpe06g00967 428 CDD RRM3_PTBPH3 240 315 IPR034797 -
Cpe06g00967 428 Gene3D - 238 334 IPR012677 -
Cpe06g00967 428 SUPERFAMILY RNA-binding domain, RBD 80 181 IPR035979 GO:0003676
Cpe06g00967 428 Gene3D - 1 81 IPR012677 -
Cpe06g00967 428 Gene3D - 335 428 IPR012677 -
Cpe06g00967 428 SUPERFAMILY RNA-binding domain, RBD 3 74 IPR035979 GO:0003676
Cpe06g00967 428 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 241 315 IPR000504 GO:0003723
Cpe06g00967 428 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 63 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00967 K14948 PTBP2, NPTB; polypyrimidine tract-binding protein 2 - csv:101210828 810.061
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00937 Cpe-Chr2:7673505 Cpe06g00967 Cpe-Chr6:9131201 0 dispersed
Cpe05g00611 Cpe-Chr5:3725815 Cpe06g00967 Cpe-Chr6:9131201 1.82E-06 dispersed
Cpe06g00967 Cpe-Chr6:9131201 Cpe07g01080 Cpe-Chr7:9553790 6.40E-06 dispersed
Cpe06g00967 Cpe-Chr6:9131201 Cpe13g00307 Cpe-Chr13:2583372 6.90E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1355 . . Bda01g00863 . . . . . . . Cma01g00928 . . . . Cpe06g00967 . Bhi04g02176 . . . . . . Cla08g00080 Cam08g0077 Cec08g0174 Cco08g0134 Clacu08g0090 Cmu08g0089 Cre08g0078 . . . . . . . Cme03g00918 Blo17g00141 Blo18g00151 . Bda13g01425 Bpe02g01100 . Bma01g01436 Bma02g00160 . . . . . . . . . . . . . . . . . . . . . . . Lsi08g00243 . Chy03g00268 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004715 2 1 2 2 1 1 2 1 0 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 1 1 3 1 2 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00967 Cpe_Chr06 FPKM 17.270864 16.70414 21.467905 20.768162 18.133017 14.169265 17.813143 39.164013 46.796261 39.62981