Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00972 ATGCAGCCGTTCAGTGTTTCGTCGGAGATTTCCACCTCCCAACTTCCATGGAAGCACCGCCTTACTCTCCGATTCGCCGCCCTACTCTTCAACGCTTCTGTCCGATCAGATCTCACCGTTAATCGCCGGCTTCTCAATTTCCTCGACCCCAAAATCCCTCCCAATCCCAATTCAATCCACGCCGTTTCCTCTTCCGATCTCACAATCGACGCCTCTCGTGATCTCTTCCTCCGAATCTTCACCCCCACCGACGCCGCCATCAACGCCGCCGCCGTCGCCGCCACGGACTCACTCCTGCCGCCGGTAATTTTCTACTTTCACGGCGGCGGTTTCGCCTTCGGTTCTGCCGCCGCCACGTCAATGGACATGGCCGCCCGCCGTTTCAGTAAGGAACTCGGAGCTGTCATAATCTCCGTGAATTACCGTCTCGCTCCTCAGTTCCGATTCCCCTGCCAATACGACGACGGATTTGACGCCGTGAAATTCATCGACGAAATGGACGACGACGATCCATTGTTGGGTAAGGCAGATCTGAGCCGTTGCTTTATTTTGGGGGAAAGCGCCGGGGGGAATCTAGGGCACCACGTGGCAGTGAGAGCGAGCGAGTACGCTTTCAAGAGAGTGAAAGTAATTGGGTTTATAGCGTCGCAGCCGTTTTTCGGCGGAGAGGAGAGAACAGAGTCGGAGATTCGGCTCTGTAATCAGCCTCCGTTAACTCTGAAACTTGCGGATTGGTTCTGGAAGGCGTTTTTGCCGGCGGGGGAAGACCGGGATCACGCGGCGGCGAATGTGAATGGACCGAACGGAAGGGATGTCTCCGGGCTGAGGAATTTTCCGGCGACGATTATTTTGGCCGGAGGATTGGATTTACTGATAGATCGGCAGAGGAGGTACTACGAGGAGCTGAAGAGAATGGGAAAGGAGGTGAAATTGGTGGTGTTTACGAACGGCGTCCATGGATTCTTTAGCTTTGAGGATCTGCCGGAATATTCTCTAATGATTAAGGAGATGAGGGATTTCATTGCAATGTTTCACCGGAATATTCTTTAA 1050 53.62 MQPFSVSSEISTSQLPWKHRLTLRFAALLFNASVRSDLTVNRRLLNFLDPKIPPNPNSIHAVSSSDLTIDASRDLFLRIFTPTDAAINAAAVAATDSLLPPVIFYFHGGGFAFGSAAATSMDMAARRFSKELGAVIISVNYRLAPQFRFPCQYDDGFDAVKFIDEMDDDDPLLGKADLSRCFILGESAGGNLGHHVAVRASEYAFKRVKVIGFIASQPFFGGEERTESEIRLCNQPPLTLKLADWFWKAFLPAGEDRDHAAANVNGPNGRDVSGLRNFPATIILAGGLDLLIDRQRRYYEELKRMGKEVKLVVFTNGVHGFFSFEDLPEYSLMIKEMRDFIAMFHRNIL 349
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9203312 9204361 - Cp4.1LG06g09420.1 Cpe06g00972 471752

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00972 349 ProSitePatterns Lipolytic enzymes "G-D-X-G" family, putative histidine active site. 103 119 IPR002168 GO:0016787
Cpe06g00972 349 SUPERFAMILY alpha/beta-Hydrolases 45 341 IPR029058 -
Cpe06g00972 349 Pfam alpha/beta hydrolase fold 103 322 IPR013094 GO:0016787
Cpe06g00972 349 Gene3D alpha/beta hydrolase 4 342 IPR029058 -
Cpe06g00972 349 PANTHER ARYLACETAMIDE DEACETYLASE 10 344 - -
Cpe06g00972 349 PANTHER ACETYL ESTERASE 10 344 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00972 - - - csv:101202912 531.561
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00972 Cpe-Chr6:9203312 Cpe11g00811 Cpe-Chr11:6572850 5.51E-104 dispersed
Cpe01g02619 Cpe-Chr1:21193651 Cpe06g00972 Cpe-Chr6:9203312 7.47E-113 transposed
Cpe03g01695 Cpe-Chr3:12913504 Cpe06g00972 Cpe-Chr6:9203312 3.65E-50 transposed
Cpe02g00985 Cpe-Chr2:8921312 Cpe06g00972 Cpe-Chr6:9203312 2.89E-160 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1718 . . . Bda03g00361 . Bpe04g00321 Bma04g00338 . . . . Cma09g01288 . . . Cpe06g00972 . . . . . . . . Cla08g00161 . Cec08g0097 Cco08g0221 . Cmu08g0153 Cre08g0140 . . . . . . . Cme09g00112 . . . . . . . . Sed10g1646 . Cmo09g01246 . . . Car09g01103 . . Bhi06g00128 Tan10g1852 Cmetu11g1682 . . . . Cla11g00796 Cam11g0832 Cec11g0818 Cco11g0820 Clacu11g1028 Cmu11g0889 . Lsi08g00162 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000161 3 6 3 2 2 10 7 9 9 7 8 9 7 7 10 8 9 1 6 8 8 5 7 8 9 11 7 4 7 3 200
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00972 Cpe_Chr06 FPKM 2.642563 3.191844 3.025641 3.076562 1.481697 1.721738 1.23565 2.32603 3.042303 3.470663