Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00975 ATGGACGCGATCGAGGAGTTGGGTGAGTTGGCTGAATCGATGCGCCAAGCGGCGGCTTTGCTTGCTGATGAAGATGTTGACGAGAATTCTGCTTCTGGTGGTGGTTCTTCTCGTAGGGCTGTGACTTTCCTCAATGTTGTGGCTTTGGGCAATGTTGGTGCTGGCAAATCTGCAGTTTTGAATAGTTTAATTGGGCATCCTGTTTTGCCAACTGGTGAAAATGGTGCTACACGAGCTCCAATAAGCATTGATCTGCAGAGGGATAGTTCTTTGAGTAGCAAATCAATCATTCTGCAAATTGATAATAAATCTCAACAGGTTTCTGCAAGTGCTTTGCGACATTCTCTACAGGACAGGTTGAGCAAGGGTTCTTCTGGAAAGGGCCGAGATGAAATATATCTAAAACTTCGCACAAGTACAGTTTTGAATAGTTTAATTGGGCATCCTGTTTTGCCAACTGGTGAAAATGGTGCTACACGAGCTCCAATAAGCATTGATCTGCAGAGGGATAGTTCTTTGAGTAGCAAATCAATCATTCTGCAAATTGATAATAAATCTCAACAGGTTTCTGCAAGTGCTTTGCGACATTCTCTACAGGACAGGTTGAGCAAGGGTTCTTCTGGAAAGGGCCGAGATGAAATATATCTAAAACTTCGCACAAGTACAGGTGCTTTGCGACATTCTCTACAGGACAGGTTGAGCAAGGGTTCTTCTGGAAAGGGCCGAGATGAAATATATCTAAAACTTCGCACAAGTACAGGTGCTTTGCGACATTCTCTACAGGACAGGTTGAGCAAGGGTTCTTCTGGAAAGGGCCGAGATGAAATATATCTAAAACTTCGCACAAGTACAGCACCTCCACTCAAGTTGGTTGATTTACCTGGGCTTGATCAACGGGCCATGGATGATTCTGTGGTTAGTGAATATGCCGAACACAATAATGCAATTTTGCTAGTTATTGTACCAGCAGCTCAAGCTCCTGAAATTGCTTCATCTAGAGCCCTAAGAGCTGCCAAGGAATTTGATGCAGAAGGTACCAGAACCATTGGTGTAATTAGCAAAATTGACCAAGCTTCTTCAGACCAGAAGTCTCTTGCTGCAGTGCAGGCTCTCCTGTTAAATCAAGGGCCAGCACGAGCATCTGATATCCCGTGGGTTGCTTTAATCGGTCAGTCGGTTTCAATAGCTACTACCCAGTCTGGATCTGTTGGCTCTGAGAATTCCTTGGAGACTGCTTGGAGAGCAGAGAGTGAAAGTCTAAAATCTATACTAACTGGTGCCCCTCAAAGTAAGCTAGGCAGGCTAGCTTTAGTTGATGCATTGTCCCAACAAATCCGGAAGCAAATGAAAGTCCGGCTTCCTAATCTTCTTTCTGGGTTACAAGGGAAGTCTCAAATAGTTCAGGATGAGTTAGTTAGGCTTGGTGAGCAAATGGTGAACGGCGTTGAGGGGACTAGAGCTCTAGCTTTGGAACTTTGCCGTGAGTTTGAAGATAAGTTTCTCCAGCACATAGGCTCTGGTGAGGGTGCAGGTTGGAAAATTGTTGCTAGCTTCGAGGGAAATTTTCCAAATCGAATCAAGCAATTACCTTTAGACAGACACTTCGATATTAATAATGTGAAGAGGATCGTATTAGAAGCTGATGGTTATCAGCCTTATCTTATATCACCTGAGAAGGGTTTGAGATCTTTAATAAAAGGTGTTTTGGAGCTTGCAAAAGAACCATCACGTCTCTGTGTTGACGAGGTGCACAGGGTTTTGATAGATATTGTTTCTGCTGCTGCTAATGGCACCCCAGGTCTTGGAAGATACCCACCATTCAAAAGAGAGGTTGTGGCCATTGCAAGTGCTGCCCTGGATGGGTTTAAAAATGAAGCGAAAAAGATGGTTGTGGCGTTAGTTGACATGGAGCGAGCATTTGTCCCACCGCAGCATTTTATACGTCTTGTACAAAGAAGGATGGAAAGACAGCGCCGGGAAGAGGAAGTGAAGACTAGATCATCAAAAAAAGGACAAGAGGCTGAAGTGATGTCAAAGAGGGCAAGTAGTCCTCAAACAAATAGTCAGCAAGCTGGTGGAAGCTTGAAATCAATGAAAGAAAAACCTAGTACGGAAGAGAAGGAAGCGCAGGAAAGTACGGGTTTGAAGACAGCAGGTGCTGAAGGAGAGATAACAGCTGGTTTCTTGTTAAAGAGAAGTGCAAAAACTAATGGTTGGAGCAGGCGATGGTTTGTTTTGAATGAGAAGACTGGAAAGCTTGGATACACCAAGAAGCAAGAAGAGAGAGACTTTCGTGGTGTCATTCCTTTAGAGGATTGTAATATAGAAGAAGTTACAGATGAGGAACAGCCTCCACCTTCAAAGAGTTCTAAGGATAAGAAGGCAAATGGGCCAGATTCTGGAAAGGGACCAAGTCTTGCGTTTAAGATTACCAGCAAAGTTCCATATAAAACTGTTTTAAAAGCCCATAGTGCTGTTGTTTTGAAAGCCGAGAGCGTCGCTGACAAGGTGGAATGGACGAACAAGATACGCCGTGTCATTCAACCGTCCCGAGGAGGACAAACGAAAGGTTCATCCTCTGGAGGTGGTCTTACCTTGCGGCAAAGTCTATCTGATGGCTCTCTAGACACAATGACTCGAAAACCTGCTGATCCTGAAGAAGAGCTGCGGTGGATGTCTCAAGAAGCTGTTGTACTTTGTCAAGTTGAGAAGGCCAAGGAAGACATGCTAAACCAATTATATAGCTCGATCAGTGGCCAAAGCTCAGCCAGGATTGAGGAGCTTCTTCTGGAGGACCCAAACGTAAAACGGAGGAGAGAACGTTATCAAAAACAATCCTCTCTCCTTTCGAAACTTACGCGCCAGCTCAGCATCCACGATAATAGTGCAGCTGCTGCTGGTTGGTCCGACAATGATGCAGCAGAAAGTAGTCCCCGAACTAGCGGAACGCCTGGAGATGACTGGAAATCTGCATTTGATGCAGCTGCTAATGGTCGGGTCGACTCCAGAAGATCTTCTTCCAATGGTCGCAGTAGGTATTCTAACGATCCCACACAAAATGGTGACATATACTCAGGTTCAAACTCGAGCAGTCGTCGTACTCCAAACCGTCTGCCACCAGCACCTCCACAGTCATCTTCTGGTTCCAAATACTTCTAG 3159 44.98 MDAIEELGELAESMRQAAALLADEDVDENSASGGGSSRRAVTFLNVVALGNVGAGKSAVLNSLIGHPVLPTGENGATRAPISIDLQRDSSLSSKSIILQIDNKSQQVSASALRHSLQDRLSKGSSGKGRDEIYLKLRTSTVLNSLIGHPVLPTGENGATRAPISIDLQRDSSLSSKSIILQIDNKSQQVSASALRHSLQDRLSKGSSGKGRDEIYLKLRTSTGALRHSLQDRLSKGSSGKGRDEIYLKLRTSTGALRHSLQDRLSKGSSGKGRDEIYLKLRTSTAPPLKLVDLPGLDQRAMDDSVVSEYAEHNNAILLVIVPAAQAPEIASSRALRAAKEFDAEGTRTIGVISKIDQASSDQKSLAAVQALLLNQGPARASDIPWVALIGQSVSIATTQSGSVGSENSLETAWRAESESLKSILTGAPQSKLGRLALVDALSQQIRKQMKVRLPNLLSGLQGKSQIVQDELVRLGEQMVNGVEGTRALALELCREFEDKFLQHIGSGEGAGWKIVASFEGNFPNRIKQLPLDRHFDINNVKRIVLEADGYQPYLISPEKGLRSLIKGVLELAKEPSRLCVDEVHRVLIDIVSAAANGTPGLGRYPPFKREVVAIASAALDGFKNEAKKMVVALVDMERAFVPPQHFIRLVQRRMERQRREEEVKTRSSKKGQEAEVMSKRASSPQTNSQQAGGSLKSMKEKPSTEEKEAQESTGLKTAGAEGEITAGFLLKRSAKTNGWSRRWFVLNEKTGKLGYTKKQEERDFRGVIPLEDCNIEEVTDEEQPPPSKSSKDKKANGPDSGKGPSLAFKITSKVPYKTVLKAHSAVVLKAESVADKVEWTNKIRRVIQPSRGGQTKGSSSGGGLTLRQSLSDGSLDTMTRKPADPEEELRWMSQEAVVLCQVEKAKEDMLNQLYSSISGQSSARIEELLLEDPNVKRRRERYQKQSSLLSKLTRQLSIHDNSAAAAGWSDNDAAESSPRTSGTPGDDWKSAFDAAANGRVDSRRSSSNGRSRYSNDPTQNGDIYSGSNSSSRRTPNRLPPAPPQSSSGSKYF 1052
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9238425 9253862 + Cp4.1LG06g09470.1 Cpe06g00975 471755

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00975 1052 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 41 119 IPR027417 -
Cpe06g00975 1052 MobiDBLite consensus disorder prediction 1000 1035 - -
Cpe06g00975 1052 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 40 454 IPR030381 GO:0005525
Cpe06g00975 1052 MobiDBLite consensus disorder prediction 781 798 - -
Cpe06g00975 1052 Pfam Dynamin family 46 129 IPR045063 -
Cpe06g00975 1052 Pfam Dynamin family 139 354 IPR045063 -
Cpe06g00975 1052 MobiDBLite consensus disorder prediction 678 697 - -
Cpe06g00975 1052 PANTHER DYNAMIN-2A 2 140 - -
Cpe06g00975 1052 Gene3D - 4 138 IPR027417 -
Cpe06g00975 1052 ProSiteProfiles GED domain profile. 864 964 IPR020850 -
Cpe06g00975 1052 MobiDBLite consensus disorder prediction 963 1052 - -
Cpe06g00975 1052 ProSitePatterns Dynamin-type guanine nucleotide-binding (G) domain signature. 151 160 IPR019762 -
Cpe06g00975 1052 MobiDBLite consensus disorder prediction 848 888 - -
Cpe06g00975 1052 MobiDBLite consensus disorder prediction 773 807 - -
Cpe06g00975 1052 Pfam Dynamin GTPase effector domain 896 951 IPR003130 GO:0003924|GO:0005525
Cpe06g00975 1052 MobiDBLite consensus disorder prediction 848 876 - -
Cpe06g00975 1052 Gene3D Dynamin, middle domain 482 682 - -
Cpe06g00975 1052 PANTHER DYNAMIN-2A 139 222 - -
Cpe06g00975 1052 PANTHER DYNAMIN 221 253 IPR022812 -
Cpe06g00975 1052 PANTHER DYNAMIN 2 140 IPR022812 -
Cpe06g00975 1052 PANTHER DYNAMIN 139 222 IPR022812 -
Cpe06g00975 1052 Pfam Dynamin central region 407 645 IPR000375 -
Cpe06g00975 1052 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 139 463 IPR027417 -
Cpe06g00975 1052 MobiDBLite consensus disorder prediction 654 676 - -
Cpe06g00975 1052 Coils Coil 4 24 - -
Cpe06g00975 1052 Pfam PH domain 727 847 IPR001849 -
Cpe06g00975 1052 ProSiteProfiles PH domain profile. 722 848 IPR001849 -
Cpe06g00975 1052 PANTHER DYNAMIN 252 982 IPR022812 -
Cpe06g00975 1052 Gene3D - 139 469 IPR027417 -
Cpe06g00975 1052 ProSitePatterns Dynamin-type guanine nucleotide-binding (G) domain signature. 69 78 IPR019762 -
Cpe06g00975 1052 Gene3D - 710 851 IPR011993 -
Cpe06g00975 1052 SUPERFAMILY PH domain-like 724 848 - -
Cpe06g00975 1052 MobiDBLite consensus disorder prediction 654 719 - -
Cpe06g00975 1052 PANTHER DYNAMIN-2A 221 253 - -
Cpe06g00975 1052 PANTHER DYNAMIN-2A 252 982 - -
Cpe06g00975 1052 SMART PH_update 723 850 IPR001849 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00975 K01528 DNM1_3; dynamin 1/3 [EC:3.6.5.5] - csv:101220753 1382.85
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe02g00986 Cpe06g00975 CCT
Cpe02g00986 Cpe06g00975 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00975 Cpe-Chr6:9238425 Cpe13g01167 Cpe-Chr13:9220196 3.64E-40 dispersed
Cpe02g00986 Cpe-Chr2:8928722 Cpe06g00975 Cpe-Chr6:9238425 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1716 Blo01g01682 Blo12g00812 . Bda03g00360 Bpe02g00260 Bpe04g00320 Bma04g00337 Bma01g02448 . . Cma01g00877 Cma09g01291 Car01g00802 . Sed03g0698 Cpe06g00975 . Bhi04g02550 Tan11g0043 Cmetu03g0129 . Hepe02g3468 . Lcy10g2361 Cla08g00152 Cam08g0148 Cec08g0103 Cco08g0213 . Cmu08g0149 Cre08g0132 Cone4ag1154 . . . . . . Cme09g00107 . . Bda11g00922 . . . . . Sed11g1774 Cmo01g00920 Cmo09g01249 . . . Car09g01106 . Cpe02g00986 Bhi06g00143 Tan10g1858 Cmetu09g1009 . . . . Cla11g00799 Cam11g0836 Cec11g0820 Cco11g0822 Clacu11g1022 Cmu11g0885 Cre11g1279 Lsi08g00154 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001593 2 2 2 2 2 2 3 2 2 2 2 2 3 2 2 4 2 2 4 2 2 2 2 2 2 2 2 4 3 2 69
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00975 Cpe_Chr06 FPKM 3.31475 4.3828 5.776798 6.090299 4.355207 3.738373 4.327047 7.85417 6.752822 7.243715
Cpe06g00975 Cpe_Chr00 FPKM 8.275926 9.906745 11.824436 9.398425 9.17748 7.651404 13.054845 20.090866 24.132311 22.919725