Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00977 ATGCGGAGGCGTGTTGGAGCTCTTCTTCGTGATAGAAGAGCTGTTGAAGTGTCTGTTAGTGGAAGGAATCCTTTGTACAAAGTTTCTCTGTCTTTGGTTTTTGTTCTGTGGGGACTTATCTTCCTCTTTAGCTTATGGTTCATCCGTGGGGATGGCTGTCAAGGATCAGTTTTACTTCCTGATGGTGTATCTACTTCAAATGAATCTACATTGGAAAGTAACAAGGACTCTGACGTTTTATATGAACCTTCAAAAGGAGAAACTGATTGTACCAGTCATTTAAACGATTCGTGCTCAATTGATGCTACAAGCCATGACGTTTTATACGAACCTTTGAAAGGAGAAACTGATTGTACCAGTCGTTTAAATGATTCGTGCTCAATTGATTCTACAAGCCAGGCTTCTGACAATGAAATGCTTTCAAGTGAAGAAAGTAGCAGTCATGTACAAGCTGCTACGGGGTTGCCTGAGGCTGAGAGCTCGAGCACCGGAGTAAAATCGGAAAGTAAACCTCTCAAGGGAGATATCTCGTCCGACACTGTTCTACTGGGCCTTGAAGAATTCAAAAGCAGAGTCTTTACATCTCGGACTAAGGATGAAACTGGTCAGGCTGGGAATACTATCCATAGAGTAGAACCTGGTGGTGCAGAGTACAATTACGCTTCAGCTTCAAAGGGAGCAAAGGTGTTGGCTTTCAACAAGGAAGCAAAAGGAGCTTCTAACATCTTAGGCAAGGACAAAGATAAGTACCTCAGAAATCCATGTTCTGCTGAAGAGAAATTTGTTGTCATAGAACTTTCAGAAGAAACCTTAGTAGTAACAATCGAAATCGCTAATTTTGAGCACCATTCTTCTAACTTGAAAGAATTCGAGCTACATGGCAGTTTGGTTTATCCAACAGATGTTTGGTTCAAGCTTGGGAATTTCACTGCTCCAAATGCAAAACATGCACATAGATTTGTTCTCAAGGATCCAAAATGGGTGAGATACTTAAAGTTGAATCTTCTTACCCACTATGGTTCAGAATTCTATTGCACACTCAGCACTGTTGAAGTTTACGGAATGGATGCTGTTGAAATGATGCTAGAGGATTTAATATCTGCTCAACATAAACCCTCTATATCAGATGAAGCTACTATCGATAAGCGAGTAACTCCGTCCCAGCCTGGATCCAATGATGTAGGACAACAACATCGTAGAGAGTCGCAATCTCTTGCTAATGAGGAAAGTGATGATGATGATGTCGTTTTAGAACTTTCAAAGAGTAATATACCTGATCCGGTCGAAGAATCACACCATCAACAACCTGGCAGAATGCCTGGTGACACTGTTCTCAAAATTTTGACGCAGAAAGTTCGTTCATTAGACCGAAGTCTATCTGTTTTGGAGCGGTATCTCGAGGACTCAACTTCCAAATATGGCAGTATATTCAAAGAGTTCGACAAAGATATAGGAAATAATGGTCTACTTATTGAGAAGACTCGTGAGGATATAAGAAATATTCTTCAAATCCAGGATAGCACAGATAAAGATCTTCATGATCTCATTTCTTGGAAGTCCACTGTTTCCTTGCAGTTGGATGGTCTGCAAAGGCATAATGCTATTCTCAGATCTGAGATTGAAAGGGTCCAGAAGAATCAAACTTTTCTGGAAAACAAAGGAATAGTTGTTTTTGTTGTGTGCATCATTTTTTCATGGTTTGCTATTTTAAGATTATTTCTGCATATTGTTGTTAGAGTACGTGAGAGAACAAATAGTTCCAGGAAATTTTGTTGTATAAGCCCTTCCTGGTATCTATTACTTTTGAGCTGTTGTATTATTCTTTTCATACAGTCGCTA 1839 39.8 MRRRVGALLRDRRAVEVSVSGRNPLYKVSLSLVFVLWGLIFLFSLWFIRGDGCQGSVLLPDGVSTSNESTLESNKDSDVLYEPSKGETDCTSHLNDSCSIDATSHDVLYEPLKGETDCTSRLNDSCSIDSTSQASDNEMLSSEESSSHVQAATGLPEAESSSTGVKSESKPLKGDISSDTVLLGLEEFKSRVFTSRTKDETGQAGNTIHRVEPGGAEYNYASASKGAKVLAFNKEAKGASNILGKDKDKYLRNPCSAEEKFVVIELSEETLVVTIEIANFEHHSSNLKEFELHGSLVYPTDVWFKLGNFTAPNAKHAHRFVLKDPKWVRYLKLNLLTHYGSEFYCTLSTVEVYGMDAVEMMLEDLISAQHKPSISDEATIDKRVTPSQPGSNDVGQQHRRESQSLANEESDDDDVVLELSKSNIPDPVEESHHQQPGRMPGDTVLKILTQKVRSLDRSLSVLERYLEDSTSKYGSIFKEFDKDIGNNGLLIEKTREDIRNILQIQDSTDKDLHDLISWKSTVSLQLDGLQRHNAILRSEIERVQKNQTFLENKGIVVFVVCIIFSWFAILRLFLHIVVRVRERTNSSRKFCCISPSWYLLLLSCCIILFIQSL 613
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9259262 9264191 - Cp4.1LG06g09440.1 Cpe06g00977 471757

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00977 613 MobiDBLite consensus disorder prediction 380 401 - -
Cpe06g00977 613 MobiDBLite consensus disorder prediction 65 88 - -
Cpe06g00977 613 Pfam Sad1 / UNC-like C-terminal 233 355 IPR012919 -
Cpe06g00977 613 MobiDBLite consensus disorder prediction 129 168 - -
Cpe06g00977 613 PANTHER MEMBRANE PROTEIN CH1 RELATED 13 612 IPR045120 GO:0016020
Cpe06g00977 613 SUPERFAMILY Galactose-binding domain-like 239 353 IPR008979 -
Cpe06g00977 613 MobiDBLite consensus disorder prediction 129 174 - -
Cpe06g00977 613 PANTHER GALACTOSE-BINDING PROTEIN 13 612 - -
Cpe06g00977 613 Coils Coil 526 553 - -
Cpe06g00977 613 ProSiteProfiles SUN domain profile. 193 357 IPR012919 -
Cpe06g00977 613 Gene3D - 235 365 - -
Cpe06g00977 613 MobiDBLite consensus disorder prediction 378 414 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00977 - - - cmax:111472033 1138.25
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe02g00987 Cpe06g00977 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00787 Cpe-Chr5:4870501 Cpe06g00977 Cpe-Chr6:9259262 4.87E-92 transposed
Cpe13g01168 Cpe-Chr13:9233067 Cpe06g00977 Cpe-Chr6:9259262 0 transposed
Cpe02g00987 Cpe-Chr2:8943946 Cpe06g00977 Cpe-Chr6:9259262 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1715 Blo01g01681 Blo12g00813 . Bda03g00359 . Bpe04g00319 Bma04g00336 . . . Cma01g00876 Cma09g01292 Car01g00801 . . Cpe06g00977 . Bhi04g02551 . . . . . . Cla08g00151 Cam08g0147 Cec08g0104 Cco08g0212 . Cmu08g0148 Cre08g0131 Cone4ag1155 . . . . . . Cme09g00106 . . Bda11g00923 . . . . . Sed01g3805 Cmo01g00919 Cmo09g01250 . . . Car09g01108 . Cpe02g00987 Bhi06g00145 Tan10g1859 Cmetu09g0015 . . . . Cla11g00801 Cam11g0837 Cec11g0822 Cco11g0824 Clacu11g1021 Cmu11g0883 Cre11g1281 Lsi08g00153 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005606 0 3 0 0 0 1 3 1 1 1 1 1 2 1 2 2 1 0 3 1 1 2 3 1 1 1 2 2 1 2 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00977 Cpe_Chr06 FPKM 4.513239 4.236996 2.599563 2.754601 3.589237 3.071055 3.307472 0.572495 0.638082 0.646609
Cpe06g00977 Cpe_Chr00 FPKM 2.582389 3.438436 2.533181 2.491054 5.782521 5.271327 4.729148 1.125889 1.262617 1.107001
Cpe06g00977 Cpe_Chr00 FPKM 2.582389 3.438436 2.533181 2.491054 5.782521 5.271327 4.729148 1.125889 1.262617 1.106927