Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00982 ATGGCGTTGAATATGAAAACCCTCACCCAAGCCTTAGCCAAGACGGCCGCGGTGATCGAGAAAACTGTTCATACCACCGTCCAGGAGGTCACCGGACCCAAGCCCCTTCAGGATTACGAGCTTCTCGATCAGATCGGCTCCGCTGGTCCTGGTATGGTTTGGAAATTGTATTCTGCGAAGGCTCGTGATTCTTCGCGGCCTCAGCAATATCCCACTGTTTGCGTATGGGTTTTGGATAAGAAGATTCTATCGGAGGCTAGGGCTCGCGCTGGGTTGTCGAAGTCTGTCGAGGATTCGTTTTTGGATCTGATTCGAGCCGATGCGGGGCGGTTGGTGAGGCTGAGGCATCCGGGAGTGGTTCATGTGGTTCAGGCGTTGGATGAGAATAAGAATGCCATGGCCATGGTTACCGAGCCGCTGTTTGCGTCGGTGGCGAATGCTGTTGGGAATGTGGAGAATATTGCTAAGCTTCCTAAGGAGCTCCAGGGTTTGGAAATGGGACTACTGGAAATAAAACATGGTTTGCTTCAGATAGCAGAGTCTTTAAACTTTCTTCATAGCAATGCACATCTCATTCATCGGGCTATATCTCCCGAGAATGTCCTCATCACTTCAAATGGAGCTTGGAAACTTGCTGGATTTGGCTTTGCAATTCCAGCAGATCAGACTTCAAGTGACATGGCTACTGTGCAAGCTTTCCATTATGCCGAGTATGATGTTGAAGATTCTGTGCTGCCTCTTCAGCCATCTCTGAATTACACTGCTCCTGAATTGGTTAGGAGTAAATCATCTTCGGCTGGTTGTTCCTCAGATATTTTCAGCTTTGGATGCCTTGCTTACCATTTGATTGCTAGAAAGCCTTTGTTTGACTGCCAAAACAATGTTAAAATGTACATGAACTCCTTAACTTACCTGTCAACTGGGTCGTTTGCTTCAATTCCTCCGGAGTTAGTTCCTGACCTGCAGAGAATGCTCTCATCCAATGAGTCTTTCCGGCCAACAGCATTGGAATTCACAGGTTCCCCATTTTTCCGAGATGACACAAGGCTGCGAGCTCTTCGTTTTCTTGACCACATGCTTGAAAGAGATAACATGCAAAAGTCTGACTTTTTGAAAGCTCTATCTGATATGTGGAAAGATTTTGATTCCCGTATATTGCGCTATAAGGTCCTTCCACCTCTCTGTGCAGAATTACGAAATCTGGTTATGCAACCTATGATACTTCCCATGGTACTCACAATAGCAGAGTCTCAGGATAAACATGATTTTGAGCTATCAACTTTGCCATCTCTTGTTCCTGTTCTGAGTACTGCTGCAGGTGACACATTGTTGCTGCTTGTGAAGCGTGCTGATCTTATAATTAACAAGACCAGTCAAGCCCAATTAATGACAAATGTCTTGCCATTGATTGTTCGGGCTTATGATGATAATGATGCTCGCATACAAGAGGAGGATAAACATGATTTTGAGCTATCAACTTTGCCATCTCTTGTTCCTGTTCTGAGTACTGCTGCAGGTGACACATTGTTGCTGCTTGTGAAGCGTGCTGATCTTATAATTAACAAGACCAGTCAAGCCCAATTAATGACAAATGTCTTGCCATTGATTGTTCGGGCTTATGATGATAATGATGCTCGCATACAAGAGGAGGTTCTGAGGAAATCAGTTTCCCTTGCTAAGCAACTTGATACACAGTTAGTGAAACAAACAATTTTGCCTCGTGTCCATGGTTTAGCTCTAAAGACAACAGTTGCTGCGGTTAGAGTTAATGCGTTGCTGTGCCTTGGAGAATTGGTTCAGACGCTTGATAAACATGCAGTTCTAGAAATCTTGCAAACAATTCAACGTTGTACAGCTGTAGACAAATCTGCTCCCACTCTCATGTGTACCCTTGGGGTTGCAAACTCAATCCTTAAGCAGTATGGAATTGAATTTGTTGCGGAGCATGTTCTTCCTTTACTCATGCCTCTTCTTACAGCCCAACAATTAAATGTTCAGCAGTTTGCTAAATATATGCTTTTTGTCAAGGATGTTCTCAGGAAAATAGAAGAGAAAAGAGGAGTCAATGTTTCTGATTCTGGAGTACCAGAGATGAAATCCTCTTTGGTTTCTAATGGTCCACAACCCCAGTCCTCAATCAGAGCTAGTGATACTGTCGTTCCAACGGTAAAAGGTCGATCTGCTTGGGATGAAGATTGGGGACCTATGTCTAAGGGACATACAACCCCACAAAATTCTACTAGCATTATCTCGTCTGCACCTGCTGTTCTTGGTGGTCAATCCGTAGCAGGAAATTCTATACAAACAAATTCTGTTGTGACAACATCTCTGTCTAGTAATCAAACTGTCGCATCTTGCCTTCCAGTTGATGTTGAGTGGCCGCCTCGAAATTCTACTGGTGGTGCACCCAGAGTATCTAATTCTGGGATGCAAGCAACTACAGGAGAATCATCTACTTCAAGCTTGGATAATGTGGACCCTTTTGCTGACTGGCCTCCACGTCCTAGTGGCTCATTAGGAAATGCGTCTCAAGCCTCCAACAATGGGGTGGTTGGACCATCCATGAACAAATATGGAACTGTGGGTACATCGAACAGTTTGAACTTTCAAACAAACGGCAATGCCAGTTGGACCCTCAACAACAAAAATATTAGTGAACCAATGAGACAAAATCATGGCAATTCGACTTTCAATTCAAGCAGTCTGGGAACTGGGGGCTTCAATTCCCAAAGTTCTATTGGATTCCAGAAGCAAAACCAGGGAATATCATCCCAACATGCATACGATGCGGACAAAAAATTAACTGATCTTGGATCCATATTTGCGCCTAGTAAAAGTGGGAATAATATTGCACCTAGACTTGCCCCGCCCCCCTCAAATGCTGTTGGTAGAGGAAGAGGAAGAGGGAGGGGGGTTTCATCAACATCTCGTTCTACTCAAAATAAATCATCATCTGGACAACCTCCCCTAATGGATTTGCTGTAA 2985 44.36 MALNMKTLTQALAKTAAVIEKTVHTTVQEVTGPKPLQDYELLDQIGSAGPGMVWKLYSAKARDSSRPQQYPTVCVWVLDKKILSEARARAGLSKSVEDSFLDLIRADAGRLVRLRHPGVVHVVQALDENKNAMAMVTEPLFASVANAVGNVENIAKLPKELQGLEMGLLEIKHGLLQIAESLNFLHSNAHLIHRAISPENVLITSNGAWKLAGFGFAIPADQTSSDMATVQAFHYAEYDVEDSVLPLQPSLNYTAPELVRSKSSSAGCSSDIFSFGCLAYHLIARKPLFDCQNNVKMYMNSLTYLSTGSFASIPPELVPDLQRMLSSNESFRPTALEFTGSPFFRDDTRLRALRFLDHMLERDNMQKSDFLKALSDMWKDFDSRILRYKVLPPLCAELRNLVMQPMILPMVLTIAESQDKHDFELSTLPSLVPVLSTAAGDTLLLLVKRADLIINKTSQAQLMTNVLPLIVRAYDDNDARIQEEDKHDFELSTLPSLVPVLSTAAGDTLLLLVKRADLIINKTSQAQLMTNVLPLIVRAYDDNDARIQEEVLRKSVSLAKQLDTQLVKQTILPRVHGLALKTTVAAVRVNALLCLGELVQTLDKHAVLEILQTIQRCTAVDKSAPTLMCTLGVANSILKQYGIEFVAEHVLPLLMPLLTAQQLNVQQFAKYMLFVKDVLRKIEEKRGVNVSDSGVPEMKSSLVSNGPQPQSSIRASDTVVPTVKGRSAWDEDWGPMSKGHTTPQNSTSIISSAPAVLGGQSVAGNSIQTNSVVTTSLSSNQTVASCLPVDVEWPPRNSTGGAPRVSNSGMQATTGESSTSSLDNVDPFADWPPRPSGSLGNASQASNNGVVGPSMNKYGTVGTSNSLNFQTNGNASWTLNNKNISEPMRQNHGNSTFNSSSLGTGGFNSQSSIGFQKQNQGISSQHAYDADKKLTDLGSIFAPSKSGNNIAPRLAPPPSNAVGRGRGRGRGVSSTSRSTQNKSSSGQPPLMDLL 994
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9841838 9860447 - Cp4.1LG06g09890.1 Cpe06g00982 471762

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00982 994 MobiDBLite consensus disorder prediction 698 718 - -
Cpe06g00982 994 SUPERFAMILY ARM repeat 315 669 IPR016024 -
Cpe06g00982 994 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 485 994 - -
Cpe06g00982 994 MobiDBLite consensus disorder prediction 971 988 - -
Cpe06g00982 994 MobiDBLite consensus disorder prediction 698 721 - -
Cpe06g00982 994 SUPERFAMILY Protein kinase-like (PK-like) 34 348 IPR011009 -
Cpe06g00982 994 MobiDBLite consensus disorder prediction 793 857 - -
Cpe06g00982 994 Gene3D Phosphorylase Kinase; domain 1 36 138 - -
Cpe06g00982 994 MobiDBLite consensus disorder prediction 943 994 - -
Cpe06g00982 994 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 7 484 - -
Cpe06g00982 994 PANTHER SCY1-RELATED S/T PROTEIN KINASE-LIKE 7 484 - -
Cpe06g00982 994 Pfam Protein kinase domain 110 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe06g00982 994 MobiDBLite consensus disorder prediction 837 857 - -
Cpe06g00982 994 ProSiteProfiles Protein kinase domain profile. 39 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe06g00982 994 MobiDBLite consensus disorder prediction 878 926 - -
Cpe06g00982 994 Gene3D Transferase(Phosphotransferase) domain 1 149 347 - -
Cpe06g00982 994 PANTHER SCY1-RELATED S/T PROTEIN KINASE-LIKE 485 994 - -
Cpe06g00982 994 Gene3D - 484 686 IPR011989 -
Cpe06g00982 994 Gene3D - 348 483 IPR011989 -
Cpe06g00982 994 MobiDBLite consensus disorder prediction 800 825 - -
Cpe06g00982 994 CDD PK_SCY1_like 45 346 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00982 K17541 SCYL2; SCY1-like protein 2 - csv:101223115 1472.99
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe02g00993 Cpe06g00982 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00982 Cpe-Chr6:9841838 Cpe05g00998 Cpe-Chr5:6530352 4.90E-12 dispersed
Cpe11g00675 Cpe-Chr11:4550689 Cpe06g00982 Cpe-Chr6:9841838 8.50E-11 dispersed
Cpe02g00993 Cpe-Chr2:9008315 Cpe06g00982 Cpe-Chr6:9841838 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1693 Blo01g01678 . . . Bpe02g00263 . . Bma01g02446 . . Cma01g00863 Cma09g01302 Car01g00792 . . Cpe06g00982 . . . . . . . . Cla08g00080 Cam08g0077 Cec08g0174 Cco08g0134 Clacu08g0090 Cmu08g0089 Cre08g0078 Cone4ag1158 . . . . . . Cme09g00077 . . Bda11g00925 . . . . . . Cmo01g00908 . . . . Car09g01114 . Cpe02g00993 . . . . . . . . . . . . . . Lsi08g00097 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006310 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 3 1 1 1 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62486 PF00069 Pkinase 1.40E-23 CL0016 Cpe PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00982 Cpe_Chr06 FPKM 11.147892 12.075743 0.764757 0.612206 0.581185 0.308389 0.569415 1.777524 1.483762 1.732201
Cpe06g00982 Cpe_Chr00 FPKM 11.151331 12.004541 0.828512 0.642374 0.581185 0.345687 0.569411 1.877426 1.504687 1.732201