Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g01008 ATGGCTCGTGGGAAGGTTCAATTGAAGAGGATTGAGAACCCTGTGCACAGGCAAGTGACGTTCTGTAAGCGCCGAGCTGGGCTGCTTAAGAAGGCTAAGGAGCTGTCTGTGTTGTGCGATGCTGAAATTGGAGTCTTCATTTTCTCCGCCCATGGAAAGCTCTATGAACTCGCCACTAAAGGGTACATGAACCACACCAATGGGAGTCAGCCACCAGAGCCACCCATAGACAACCAAACCCTGGAAGTAAAGGAGGAGGTCAACAGGCTGAAACAAGAAATTGAAGTCCTAAAGGGTCTCAGGAATGCTTTAGGAGGAGGAGGAGTGGAAGGAATAAGGACATTGGATGAGCTTGATATGCTTGAGAAGCAACTTGAGATTTGGATATGTCAAGTGCGTTCTACAAAGGAACTCATACTGAAAGCTGCCAACAAGTATCTTCACGATAAGATGGAGGAAAACATTTGCAACACAACTAACATTGAAGCTGTGAATATTACCAACTGTCAATATCCACTAACTATACAGGATGAGTTATTTCAGCTTTGCACTTAA 555 44.86 MARGKVQLKRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVFIFSAHGKLYELATKGYMNHTNGSQPPEPPIDNQTLEVKEEVNRLKQEIEVLKGLRNALGGGGVEGIRTLDELDMLEKQLEIWICQVRSTKELILKAANKYLHDKMEENICNTTNIEAVNITNCQYPLTIQDELFQLCT 184
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10224939 10231576 - Cp4.1LG06g10070.1 Cpe06g01008 471788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g01008 184 Pfam K-box region 79 152 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cpe06g01008 184 SUPERFAMILY SRF-like 1 64 IPR036879 GO:0003677|GO:0046983
Cpe06g01008 184 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 56 IPR002100 GO:0003677|GO:0046983
Cpe06g01008 184 CDD MADS_MEF2_like 2 70 IPR033896 GO:0000977|GO:0045944
Cpe06g01008 184 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cpe06g01008 184 Gene3D - 15 92 IPR036879 GO:0003677|GO:0046983
Cpe06g01008 184 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cpe06g01008 184 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cpe06g01008 184 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cpe06g01008 184 Coils Coil 80 100 - -
Cpe06g01008 184 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 181 - -
Cpe06g01008 184 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL12 1 181 - -
Cpe06g01008 184 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g01008 Cpe-Chr6:10224939 Cpe03g01699 Cpe-Chr3:12926741 1.42E-33 dispersed
Cpe02g01021 Cpe-Chr2:9380290 Cpe06g01008 Cpe-Chr6:10224939 4.32E-33 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49697 PF01486 K-box 4.20E-10 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g01008 - - csv:105435626 317.39