Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe06g01016 | ATGCAATCCACAACTGGTGGTGCTACTGGCAGTCGTAGCGGCGGCGGCGGTAGCGGCGGCGGACTTGCTCGCTTCCGCTCTGCTCCGGCTGCTTGGTTGGAAGCGCTTTTGGAGGACGAGGAGGAGGACCTACTCAGGCCTAATCAGTGCTTGACTCAGCTTCTCGCTGGAAACTCCTCCGACCTAGACTCCCCCGCGGATCAGGCCTTGTTCGAGCCCAATCCCTCCGCTGGTTTCCAGAGGCAAAATAGCTCTCCGGCTGAGTTTCTCGGCGCCTCCGGAATCGGGGAAGGATTTTACTCTTCCTATGCTATCAATTCCTCGGCCGCTCTCGAGATCTCTCCCACTTCCAAGCGGGGGAGAGAAGTCGACGCGCAGAACTTCCCGCCCAAATTTTCACCGCAGCTGAAAAGGGAAGGAAGTGGAGTTTCGAGTTTGATAGACATGGAAATGGAGAAGTTATTGGAGGACTCTGTGCCCTGCCGTGTGAGGGCCAAGCGTGGCTGTGCGACGCATCCTCGGAGCATTGCTGAGAGGGTTCGTAGGACTAGAATTAGTGACAGAATAAGGAAGCTTCAGGAGGTTGTCCCCAACATGGATAAGCAAACAAACACTGCAGATATGTTGGAAGAAGCAGTAGAGTATGTCAAATTCCTTCAAAAGCAGATTCAGGAACTCACCGAGCATCAGCGCAGGTGCACATGCACGGTTAAGGAATAA | 720 | 54.31 | MQSTTGGATGSRSGGGGSGGGLARFRSAPAAWLEALLEDEEEDLLRPNQCLTQLLAGNSSDLDSPADQALFEPNPSAGFQRQNSSPAEFLGASGIGEGFYSSYAINSSAALEISPTSKRGREVDAQNFPPKFSPQLKREGSGVSSLIDMEMEKLLEDSVPCRVRAKRGCATHPRSIAERVRRTRISDRIRKLQEVVPNMDKQTNTADMLEEAVEYVKFLQKQIQELTEHQRRCTCTVKE | 239 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 10530498 | 10537447 | - | Cp4.1LG06g10120.1 | Cpe06g01016 | 471796 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe06g01016 | 239 | Gene3D | - | 170 | 239 | IPR036638 | GO:0046983 | |
Cpe06g01016 | 239 | PANTHER | TRANSCRIPTION FACTOR BHLH80 | 14 | 237 | - | - | |
Cpe06g01016 | 239 | CDD | bHLH_AtbHLH_like | 174 | 226 | IPR045239 | - | |
Cpe06g01016 | 239 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 172 | 232 | IPR036638 | GO:0046983 | |
Cpe06g01016 | 239 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 169 | 219 | IPR011598 | GO:0046983 | |
Cpe06g01016 | 239 | Coils | Coil | 209 | 229 | - | - | |
Cpe06g01016 | 239 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
Cpe06g01016 | 239 | SMART | finulus | 175 | 225 | IPR011598 | GO:0046983 | |
Cpe06g01016 | 239 | Pfam | Helix-loop-helix DNA-binding domain | 174 | 220 | IPR011598 | GO:0046983 | |
Cpe06g01016 | 239 | PANTHER | TRANSCRIPTION FACTOR BHLH83-RELATED | 14 | 237 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe06g01016 | Cpe-Chr6:10530498 | Cpe18g00157 | Cpe-Chr18:3200521 | 8.40E-40 | dispersed | |
Cpe06g01016 | Cpe-Chr6:10530498 | Cpe04g00929 | Cpe-Chr4:8418342 | 8.54E-42 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
49699 | PF00010 | HLH | 2.90E-10 | No_clan | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe06g01016 | - | - | csv:101209773 | 348.206 |