Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g01016 ATGCAATCCACAACTGGTGGTGCTACTGGCAGTCGTAGCGGCGGCGGCGGTAGCGGCGGCGGACTTGCTCGCTTCCGCTCTGCTCCGGCTGCTTGGTTGGAAGCGCTTTTGGAGGACGAGGAGGAGGACCTACTCAGGCCTAATCAGTGCTTGACTCAGCTTCTCGCTGGAAACTCCTCCGACCTAGACTCCCCCGCGGATCAGGCCTTGTTCGAGCCCAATCCCTCCGCTGGTTTCCAGAGGCAAAATAGCTCTCCGGCTGAGTTTCTCGGCGCCTCCGGAATCGGGGAAGGATTTTACTCTTCCTATGCTATCAATTCCTCGGCCGCTCTCGAGATCTCTCCCACTTCCAAGCGGGGGAGAGAAGTCGACGCGCAGAACTTCCCGCCCAAATTTTCACCGCAGCTGAAAAGGGAAGGAAGTGGAGTTTCGAGTTTGATAGACATGGAAATGGAGAAGTTATTGGAGGACTCTGTGCCCTGCCGTGTGAGGGCCAAGCGTGGCTGTGCGACGCATCCTCGGAGCATTGCTGAGAGGGTTCGTAGGACTAGAATTAGTGACAGAATAAGGAAGCTTCAGGAGGTTGTCCCCAACATGGATAAGCAAACAAACACTGCAGATATGTTGGAAGAAGCAGTAGAGTATGTCAAATTCCTTCAAAAGCAGATTCAGGAACTCACCGAGCATCAGCGCAGGTGCACATGCACGGTTAAGGAATAA 720 54.31 MQSTTGGATGSRSGGGGSGGGLARFRSAPAAWLEALLEDEEEDLLRPNQCLTQLLAGNSSDLDSPADQALFEPNPSAGFQRQNSSPAEFLGASGIGEGFYSSYAINSSAALEISPTSKRGREVDAQNFPPKFSPQLKREGSGVSSLIDMEMEKLLEDSVPCRVRAKRGCATHPRSIAERVRRTRISDRIRKLQEVVPNMDKQTNTADMLEEAVEYVKFLQKQIQELTEHQRRCTCTVKE 239
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10530498 10537447 - Cp4.1LG06g10120.1 Cpe06g01016 471796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g01016 239 Gene3D - 170 239 IPR036638 GO:0046983
Cpe06g01016 239 PANTHER TRANSCRIPTION FACTOR BHLH80 14 237 - -
Cpe06g01016 239 CDD bHLH_AtbHLH_like 174 226 IPR045239 -
Cpe06g01016 239 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 172 232 IPR036638 GO:0046983
Cpe06g01016 239 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 169 219 IPR011598 GO:0046983
Cpe06g01016 239 Coils Coil 209 229 - -
Cpe06g01016 239 MobiDBLite consensus disorder prediction 1 22 - -
Cpe06g01016 239 SMART finulus 175 225 IPR011598 GO:0046983
Cpe06g01016 239 Pfam Helix-loop-helix DNA-binding domain 174 220 IPR011598 GO:0046983
Cpe06g01016 239 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 14 237 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g01016 Cpe-Chr6:10530498 Cpe18g00157 Cpe-Chr18:3200521 8.40E-40 dispersed
Cpe06g01016 Cpe-Chr6:10530498 Cpe04g00929 Cpe-Chr4:8418342 8.54E-42 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49699 PF00010 HLH 2.90E-10 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g01016 - - csv:101209773 348.206