Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g01023 ATGTCTCGAAGATCGACTAGGTTAGCAGAAAATGCAAATGAAAATTTGAAGAAAACAATAAATAGTGAAGCTGCGACATCATCTGGAACTAAGAGATATGGTGTATCTGGGGGAAGCCATAAATCTTCTAGAGGGAGGCCGAAGTTGAAGCGGGATAGTGAAATCAAGCTAAATGAAGTTACGTTTCCTCCTTTATCTTTTGAGCAATTAGAGGGAAAGAAGAGAAAGACTTGCAGAAAAAGCTCAGTGGTCACAAGAGCAACTGCTTCAACGAACTTCAAGTCTGAACGGATCAAAAAAGGGGACGGGAGATCAAGGAAGAGGGTGTATTATCAGAAAGTGGTTTTTGATGGTGGTGAATTTGAGGTTGGGGATGATGTTTATGTGAGAAGGAGAGAAGATGCAAGCTCCGACAATGAAGACCCCGAAGTTGAGGAGTGTAGAGTGTGCTTTAAGTCTGGAAAGGCTATAATGATCGAATGTGATGATTGTCTTGGTGGTTTTCATTTGAAGTGTTTGGAGCCGCCCATGAAGGAAATCCCTGATGGTGATTGGATTTGTGGGTTTTGTGAGGCTACTAAAATGGGCAAAGAGGTTCAATTACCAAAGCCTCCGGCAGGTAAAAAACGGTTAACTAGACTGTTGGAAATGTGCAGTTTATGGAAAGAAGTAAATGGCAGCCATCACTGTAAGGTTAGATGGTATATAATCCCAGAAGAGACAGCAGCTGGAAGGCAACCACATAACTTGAAGAGAGAGCTTTATTTAACTAATGATTACGCAGATATTGAGATGGAATCGCTTCTTAGACAGTGTCAAGTCATGAATCCTAAAGACTACTATAATGCCAAGGAAGGGGATGATATATTTTTATGTGAGTATGAATATGACGTTCGTTGGCATAGTTTCAAGCGGTTAGCTGAAATTAATAAAGAAGAGGATGGTGAAGCAGTTGATAGTGACAAAGACTGGAAGTTGGAACAGAATGTAGACTCTGATTCAGATGGTGATGTGGAATATGAAGAAGAGAGAGCAAAAATTTTACAATCTCGAAACTACCCAAGCTCTACCCACGAATTGGCTGCAAATTCAAGGAAAGGACAATTTTGTGGACTACAAAAGATAGGAGCAAAGAAGATCCCCGAGCATATAAGATGCCACAAACAGACTGAATTGGAAAGAGCAAAGGCAACCCTCATGTTGGCGTCATTACCCAAGTCTCTACCTTGTAGGAATAAAGAAATTGAGGAGATAACTACATTTATAGAAAGTGCTATATGTGGTGATCAATGTTTGGGGCGATGCTTGTACATCCATGGTGTTCCAGGAACAGGCAAGACAATGAGTGTCCTGTCAGTAATGAGAAACTTGCGGGCTAAAGTTGATGCCGGAAATATAAGGCCTCATTGCTTTGTAGAGGTCAATGGTCTAAAGCTGGCAGCACCAGAAAATATATACAGGGTTATACATGAAGCATTAACTGGGCATAGGGTTCACTGGAAAAAAGCGCTTCAGTTGTTGACCAAACGGTTTTCAGATGTAAATAATTGCAAAGGGGATGAACGAACTTGCATTCTTCTCATTGATGAACTTGATCTTCTTGTAACAAGAAATCAGTCTGTTTTATACAACATTCTTGACTGGCCGACAAAGCCACAAGGAAAGTTAATTGTGATAGGTATTGCAAATACCATGGACCTTCCTGAGAAGTTGCTTCCTCGAATTTCTAGCCGAATGGGTATTGAAAGGCTTTGTTTTGGCCCTTATAATTATCAGCAACTTCAAGAAATAATTTTGAGCCGCCTCGAAGGAATCGATGCATTTGAGAAACAAGCTATTGAATTTGCATCAAGAAAGGTAGCTGCCATTTCAGGAGATGCACGTCGAGCTCTGGAGATATGTAGGCGTGCAGCTGAAATTACAGATTATCGTATAAAGAAGAGTTTGACTTCCAACACTAGTATGAATGCGAAAACACATGTAGGAATAGCTGAGGTGGAAGCAGCGATTCATGAAATGTTTCAAGCACCTCATATTCAAGTGATGAAGAGTTGTTCTAAGCAGAGTAAGATCTTTTTGACAGCTATGGTGCACGAACTTTATAAAACTGGAATGGGTGAAGCAACCTTTGAAAAGCTTGCCATGACTGTCTCGTATCTTTGTACAAGCAATGGAGAGGAATTTCCTGGATATGATGCTCTCTTGAAAGTTGGCTGCAGGCTTGGTGAATGCAGAATTATTTTATGTGAATCAGGATCAAAACACCGATTGCAAAAGTTACAGCTTAATTTTCCAAATGATGACGTCTCCTTTGCATTGAAAGACAGTAAGGATCTACCTTGGTTGGCTAAGTATCTATGA 2361 40.45 MSRRSTRLAENANENLKKTINSEAATSSGTKRYGVSGGSHKSSRGRPKLKRDSEIKLNEVTFPPLSFEQLEGKKRKTCRKSSVVTRATASTNFKSERIKKGDGRSRKRVYYQKVVFDGGEFEVGDDVYVRRREDASSDNEDPEVEECRVCFKSGKAIMIECDDCLGGFHLKCLEPPMKEIPDGDWICGFCEATKMGKEVQLPKPPAGKKRLTRLLEMCSLWKEVNGSHHCKVRWYIIPEETAAGRQPHNLKRELYLTNDYADIEMESLLRQCQVMNPKDYYNAKEGDDIFLCEYEYDVRWHSFKRLAEINKEEDGEAVDSDKDWKLEQNVDSDSDGDVEYEEERAKILQSRNYPSSTHELAANSRKGQFCGLQKIGAKKIPEHIRCHKQTELERAKATLMLASLPKSLPCRNKEIEEITTFIESAICGDQCLGRCLYIHGVPGTGKTMSVLSVMRNLRAKVDAGNIRPHCFVEVNGLKLAAPENIYRVIHEALTGHRVHWKKALQLLTKRFSDVNNCKGDERTCILLIDELDLLVTRNQSVLYNILDWPTKPQGKLIVIGIANTMDLPEKLLPRISSRMGIERLCFGPYNYQQLQEIILSRLEGIDAFEKQAIEFASRKVAAISGDARRALEICRRAAEITDYRIKKSLTSNTSMNAKTHVGIAEVEAAIHEMFQAPHIQVMKSCSKQSKIFLTAMVHELYKTGMGEATFEKLAMTVSYLCTSNGEEFPGYDALLKVGCRLGECRIILCESGSKHRLQKLQLNFPNDDVSFALKDSKDLPWLAKYL 786
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10624499 10645965 - Cp4.1LG06g10260.1 Cpe06g01023 471803

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g01023 786 Pfam PHD-finger 147 191 IPR019787 -
Cpe06g01023 786 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 137 188 IPR013083 -
Cpe06g01023 786 ProSiteProfiles Zinc finger PHD-type profile. 144 193 IPR019787 -
Cpe06g01023 786 Gene3D - 87 322 IPR043151 -
Cpe06g01023 786 MobiDBLite consensus disorder prediction 1 37 - -
Cpe06g01023 786 PANTHER CELL DIVISION CONTROL PROTEIN 6-RELATED 95 782 - -
Cpe06g01023 786 Pfam ATPase family associated with various cellular activities (AAA) 437 582 IPR003959 GO:0005524|GO:0016887
Cpe06g01023 786 Gene3D - 585 674 - -
Cpe06g01023 786 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 402 647 IPR027417 -
Cpe06g01023 786 Pfam BAH domain 213 304 IPR001025 GO:0003682
Cpe06g01023 786 SUPERFAMILY FYVE/PHD zinc finger 133 197 IPR011011 -
Cpe06g01023 786 Pfam AAA lid domain 609 642 IPR041083 -
Cpe06g01023 786 SMART BAH_4 119 307 IPR001025 GO:0003682
Cpe06g01023 786 ProSitePatterns Zinc finger PHD-type signature. 147 190 IPR019786 -
Cpe06g01023 786 Gene3D - 388 584 IPR027417 -
Cpe06g01023 786 PANTHER ORIGIN RECOGNITION COMPLEX SUBUNIT 1 95 782 IPR020793 -
Cpe06g01023 786 MobiDBLite consensus disorder prediction 1 54 - -
Cpe06g01023 786 SMART AAA_5 432 585 IPR003593 -
Cpe06g01023 786 CDD AAA 413 588 - -
Cpe06g01023 786 ProSiteProfiles BAH domain profile. 191 307 IPR001025 GO:0003682
Cpe06g01023 786 SMART PHD_3 146 191 IPR001965 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g01023 K02603 ORC1; origin recognition complex subunit 1 - csv:101214082 1343.18
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g01023 Cpe-Chr6:10624499 Cpe16g00653 Cpe-Chr16:6903047 3.66E-30 dispersed
Cpe06g01023 Cpe-Chr6:10624499 Cpe19g01203 Cpe-Chr19:8078742 1.99E-06 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe06g01023 . 106 786 Core DNA Replication Machinery Family AT4G14700 65.0 4.4e-259 891.3
Cpe06g01023 . 73 786 Core DNA Replication Machinery Family AT4G12620 65.7 1.7e-271 932.6
Cpe07g00469 . 1 276 Core DNA Replication Machinery Family AT2G37560 68.1 2.7e-109 392.5
Cpe01g01014 . 9 410 Core DNA Replication Machinery Family AT2G01120 65.8 3.4e-154 542.0
Cpe12g00375 . 3 536 Core DNA Replication Machinery Family AT4G29910 56.9 1.6e-167 586.6
Cpe11g00701 . 1 226 Core DNA Replication Machinery Family AT1G26840 73.0 1.5e-89 326.6
Cpe08g00047 . 962 1793 Core DNA Replication Machinery Family AT1G79150 58.4 2.9e-242 835.5
Cpe15g00894 . 1 368 Core DNA Replication Machinery Family AT1G79150 52.6 2.1e-102 370.9
Cpe03g00916 . 9 939 Core DNA Replication Machinery Family AT1G44900 75.2 0.0e+00 1335.9
Cpe08g00006 . 1 966 Core DNA Replication Machinery Family AT1G44900 73.4 0.0e+00 1331.6
Cpe19g01129 CCT 65 636 Core DNA Replication Machinery Family AT5G46280 81.5 2.1e-268 921.8
Cpe04g00111 CST 1 845 Core DNA Replication Machinery Family AT2G16440 74.9 0.0e+00 1179.5
Cpe15g00556 CST 1 845 Core DNA Replication Machinery Family AT2G16440 76.9 0.0e+00 1159.4
Cpe07g01135 . 1 735 Core DNA Replication Machinery Family AT2G07690 78.4 0.0e+00 1114.0
Cpe19g01218 . 7 818 Core DNA Replication Machinery Family AT5G44635 71.6 0.0e+00 1170.6
Cpe17g00747 . 11 722 Core DNA Replication Machinery Family AT4G02060 85.7 0.0e+00 1218.0
Cpe12g00890 . 8 678 Core DNA Replication Machinery Family AT4G02060 81.3 0.0e+00 1137.9
Cpe16g00653 . 30 518 Core DNA Replication Machinery Family AT2G29680 60.4 1.4e-162 570.1
Cpe16g00653 . 30 479 Core DNA Replication Machinery Family AT1G07270 58.1 2.0e-142 503.1
Cpe12g01089 . 1 593 Core DNA Replication Machinery Family AT3G25100 76.6 5.2e-257 884.0
Cpe08g01122 . 37 715 Core DNA Replication Machinery Family AT3G09660 67.0 2.4e-278 955.3
Cpe15g00364 . 16 642 Core DNA Replication Machinery Family AT2G14050 78.4 2.3e-287 984.9
Cpe16g00316 . 1 437 Core DNA Replication Machinery Family AT2G20980 51.3 2.6e-111 399.4
Cpe06g00607 CCT 7 893 Core DNA Replication Machinery Family AT1G77320 50.1 5.9e-237 818.1
Cpe17g00581 . 1 200 Core DNA Replication Machinery Family AT1G80190 66.8 7.5e-75 277.3
Cpe19g00178 . 1 145 Core DNA Replication Machinery Family AT3G12530 73.1 1.2e-61 233.0
Cpe01g02514 . 8 177 Core DNA Replication Machinery Family AT1G19080 64.1 1.7e-57 219.5
Cpe01g02514 . 8 177 Core DNA Replication Machinery Family AT3G55490 64.1 1.7e-57 219.5
Cpe03g01740 . 15 164 Core DNA Replication Machinery Family AT5G49010 66.7 5.0e-52 201.4
Cpe05g01165 . 1 1529 Core DNA Replication Machinery Family AT5G67100 59.5 0.0e+00 1731.1
Cpe09g00571 . 2 625 Core DNA Replication Machinery Family AT1G67630 63.5 1.3e-223 773.1
Cpe17g01067 . 1 359 Core DNA Replication Machinery Family AT1G67320 53.3 1.8e-130 463.4
Cpe06g00974 . 1 483 Core DNA Replication Machinery Family AT5G41880 60.2 1.7e-172 602.8
Cpe19g00507 . 47 1084 Core DNA Replication Machinery Family AT5G63960 80.4 0.0e+00 1696.4
Cpe03g00370 . 15 431 Core DNA Replication Machinery Family AT2G42120 73.1 3.6e-191 664.8
Cpe17g01067 . 1 359 Core DNA Replication Machinery Family AT1G67320 53.3 1.8e-130 463.4
Cpe05g00419 . 1 2115 Core DNA Replication Machinery Family AT1G08260 70.1 0.0e+00 2947.9
Cpe05g00419 . 9 2221 Core DNA Replication Machinery Family AT2G27120 67.0 0.0e+00 2918.3
Cpe02g01094 . 7 502 Core DNA Replication Machinery Family AT5G22110 69.0 2.1e-195 679.1
Cpe05g00456 . 1 929 Core DNA Replication Machinery Family AT5G22010 62.6 3.9e-304 1041.2
Cpe14g00835 . 1 333 Core DNA Replication Machinery Family AT1G63160 89.5 3.8e-172 601.3
Cpe10g01069 . 11 275 Core DNA Replication Machinery Family AT5G27740 65.4 7.0e-92 334.7
Cpe02g00567 . 3 323 Core DNA Replication Machinery Family AT1G21690 80.7 3.3e-144 508.4
Cpe01g02062 . 1 363 Core DNA Replication Machinery Family AT1G77470 73.9 2.6e-150 528.9
Cpe13g00630 . 1 455 Core DNA Replication Machinery Family AT1G77470 62.9 2.3e-146 515.8
Cpe11g01184 . 34 626 Core DNA Replication Machinery Family AT2G06510 69.0 2.3e-252 868.6
Cpe11g01188 . 26 618 Core DNA Replication Machinery Family AT2G06510 69.0 2.3e-252 868.6
Cpe08g00899 . 30 697 Core DNA Replication Machinery Family AT2G06510 52.1 1.1e-201 700.3
Cpe14g01003 . 34 685 Core DNA Replication Machinery Family AT2G06510 52.6 1.0e-199 693.7
Cpe04g01458 . 1 622 Core DNA Replication Machinery Family AT5G08020 67.9 3.5e-245 844.7
Cpe08g00899 . 6 804 Core DNA Replication Machinery Family AT5G45400 51.7 7.0e-231 797.7
Cpe14g01003 . 10 784 Core DNA Replication Machinery Family AT5G45400 51.6 4.8e-224 775.0
Cpe04g01458 . 1 617 Core DNA Replication Machinery Family AT5G61000 65.6 6.7e-239 823.9
Cpe08g00899 . 1 818 Core DNA Replication Machinery Family AT4G19130 53.3 4.9e-231 798.1
Cpe14g01003 . 5 771 Core DNA Replication Machinery Family AT4G19130 54.8 8.7e-228 787.3
Cpe02g00418 . 1 252 Core DNA Replication Machinery Family AT2G24490 50.2 4.2e-68 255.4
Cpe04g00203 . 1 402 Core DNA Replication Machinery Family AT5G26680 80.7 5.5e-181 630.9
Cpe03g01241 . 1 297 Core DNA Replication Machinery Family AT2G25100 66.7 1.0e-114 410.2
Cpe16g00505 . 44 785 Core DNA Replication Machinery Family AT1G08130 66.3 5.4e-278 954.1
Cpe16g00505 . 204 785 Core DNA Replication Machinery Family AT1G49250 66.6 3.6e-227 785.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002386 0 17 2 1 1 1 1 1 1 2 1 1 1 1 5 1 1 1 1 1 2 1 1 1 2 2 1 1 3 2 57
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49700 PF00004 AAA 5.50E-19 CL0023 Cpe TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g01023 Cpe_Chr06 FPKM 0.899233 1.000859 3.761616 3.601354 11.198204 11.353331 7.545567 0.860953 1.406728 1.192284
Cpe06g01023 Cpe_Chr00 FPKM 1.175436 1.111301 2.135975 1.395274 4.783776 4.301682 3.89177 0.222878 0.542369 0.629525