Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g01023 ATGTCTCGAAGATCGACTAGGTTAGCAGAAAATGCAAATGAAAATTTGAAGAAAACAATAAATAGTGAAGCTGCGACATCATCTGGAACTAAGAGATATGGTGTATCTGGGGGAAGCCATAAATCTTCTAGAGGGAGGCCGAAGTTGAAGCGGGATAGTGAAATCAAGCTAAATGAAGTTACGTTTCCTCCTTTATCTTTTGAGCAATTAGAGGGAAAGAAGAGAAAGACTTGCAGAAAAAGCTCAGTGGTCACAAGAGCAACTGCTTCAACGAACTTCAAGTCTGAACGGATCAAAAAAGGGGACGGGAGATCAAGGAAGAGGGTGTATTATCAGAAAGTGGTTTTTGATGGTGGTGAATTTGAGGTTGGGGATGATGTTTATGTGAGAAGGAGAGAAGATGCAAGCTCCGACAATGAAGACCCCGAAGTTGAGGAGTGTAGAGTGTGCTTTAAGTCTGGAAAGGCTATAATGATCGAATGTGATGATTGTCTTGGTGGTTTTCATTTGAAGTGTTTGGAGCCGCCCATGAAGGAAATCCCTGATGGTGATTGGATTTGTGGGTTTTGTGAGGCTACTAAAATGGGCAAAGAGGTTCAATTACCAAAGCCTCCGGCAGGTAAAAAACGGTTAACTAGACTGTTGGAAATGTGCAGTTTATGGAAAGAAGTAAATGGCAGCCATCACTGTAAGGTTAGATGGTATATAATCCCAGAAGAGACAGCAGCTGGAAGGCAACCACATAACTTGAAGAGAGAGCTTTATTTAACTAATGATTACGCAGATATTGAGATGGAATCGCTTCTTAGACAGTGTCAAGTCATGAATCCTAAAGACTACTATAATGCCAAGGAAGGGGATGATATATTTTTATGTGAGTATGAATATGACGTTCGTTGGCATAGTTTCAAGCGGTTAGCTGAAATTAATAAAGAAGAGGATGGTGAAGCAGTTGATAGTGACAAAGACTGGAAGTTGGAACAGAATGTAGACTCTGATTCAGATGGTGATGTGGAATATGAAGAAGAGAGAGCAAAAATTTTACAATCTCGAAACTACCCAAGCTCTACCCACGAATTGGCTGCAAATTCAAGGAAAGGACAATTTTGTGGACTACAAAAGATAGGAGCAAAGAAGATCCCCGAGCATATAAGATGCCACAAACAGACTGAATTGGAAAGAGCAAAGGCAACCCTCATGTTGGCGTCATTACCCAAGTCTCTACCTTGTAGGAATAAAGAAATTGAGGAGATAACTACATTTATAGAAAGTGCTATATGTGGTGATCAATGTTTGGGGCGATGCTTGTACATCCATGGTGTTCCAGGAACAGGCAAGACAATGAGTGTCCTGTCAGTAATGAGAAACTTGCGGGCTAAAGTTGATGCCGGAAATATAAGGCCTCATTGCTTTGTAGAGGTCAATGGTCTAAAGCTGGCAGCACCAGAAAATATATACAGGGTTATACATGAAGCATTAACTGGGCATAGGGTTCACTGGAAAAAAGCGCTTCAGTTGTTGACCAAACGGTTTTCAGATGTAAATAATTGCAAAGGGGATGAACGAACTTGCATTCTTCTCATTGATGAACTTGATCTTCTTGTAACAAGAAATCAGTCTGTTTTATACAACATTCTTGACTGGCCGACAAAGCCACAAGGAAAGTTAATTGTGATAGGTATTGCAAATACCATGGACCTTCCTGAGAAGTTGCTTCCTCGAATTTCTAGCCGAATGGGTATTGAAAGGCTTTGTTTTGGCCCTTATAATTATCAGCAACTTCAAGAAATAATTTTGAGCCGCCTCGAAGGAATCGATGCATTTGAGAAACAAGCTATTGAATTTGCATCAAGAAAGGTAGCTGCCATTTCAGGAGATGCACGTCGAGCTCTGGAGATATGTAGGCGTGCAGCTGAAATTACAGATTATCGTATAAAGAAGAGTTTGACTTCCAACACTAGTATGAATGCGAAAACACATGTAGGAATAGCTGAGGTGGAAGCAGCGATTCATGAAATGTTTCAAGCACCTCATATTCAAGTGATGAAGAGTTGTTCTAAGCAGAGTAAGATCTTTTTGACAGCTATGGTGCACGAACTTTATAAAACTGGAATGGGTGAAGCAACCTTTGAAAAGCTTGCCATGACTGTCTCGTATCTTTGTACAAGCAATGGAGAGGAATTTCCTGGATATGATGCTCTCTTGAAAGTTGGCTGCAGGCTTGGTGAATGCAGAATTATTTTATGTGAATCAGGATCAAAACACCGATTGCAAAAGTTACAGCTTAATTTTCCAAATGATGACGTCTCCTTTGCATTGAAAGACAGTAAGGATCTACCTTGGTTGGCTAAGTATCTATGA 2361 40.45 MSRRSTRLAENANENLKKTINSEAATSSGTKRYGVSGGSHKSSRGRPKLKRDSEIKLNEVTFPPLSFEQLEGKKRKTCRKSSVVTRATASTNFKSERIKKGDGRSRKRVYYQKVVFDGGEFEVGDDVYVRRREDASSDNEDPEVEECRVCFKSGKAIMIECDDCLGGFHLKCLEPPMKEIPDGDWICGFCEATKMGKEVQLPKPPAGKKRLTRLLEMCSLWKEVNGSHHCKVRWYIIPEETAAGRQPHNLKRELYLTNDYADIEMESLLRQCQVMNPKDYYNAKEGDDIFLCEYEYDVRWHSFKRLAEINKEEDGEAVDSDKDWKLEQNVDSDSDGDVEYEEERAKILQSRNYPSSTHELAANSRKGQFCGLQKIGAKKIPEHIRCHKQTELERAKATLMLASLPKSLPCRNKEIEEITTFIESAICGDQCLGRCLYIHGVPGTGKTMSVLSVMRNLRAKVDAGNIRPHCFVEVNGLKLAAPENIYRVIHEALTGHRVHWKKALQLLTKRFSDVNNCKGDERTCILLIDELDLLVTRNQSVLYNILDWPTKPQGKLIVIGIANTMDLPEKLLPRISSRMGIERLCFGPYNYQQLQEIILSRLEGIDAFEKQAIEFASRKVAAISGDARRALEICRRAAEITDYRIKKSLTSNTSMNAKTHVGIAEVEAAIHEMFQAPHIQVMKSCSKQSKIFLTAMVHELYKTGMGEATFEKLAMTVSYLCTSNGEEFPGYDALLKVGCRLGECRIILCESGSKHRLQKLQLNFPNDDVSFALKDSKDLPWLAKYL 786
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10624499 10645965 - Cp4.1LG06g10260.1 Cpe06g01023 471803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g01023 786 Pfam PHD-finger 147 191 IPR019787 -
Cpe06g01023 786 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 137 188 IPR013083 -
Cpe06g01023 786 ProSiteProfiles Zinc finger PHD-type profile. 144 193 IPR019787 -
Cpe06g01023 786 Gene3D - 87 322 IPR043151 -
Cpe06g01023 786 MobiDBLite consensus disorder prediction 1 37 - -
Cpe06g01023 786 PANTHER CELL DIVISION CONTROL PROTEIN 6-RELATED 95 782 - -
Cpe06g01023 786 Pfam ATPase family associated with various cellular activities (AAA) 437 582 IPR003959 GO:0005524|GO:0016887
Cpe06g01023 786 Gene3D - 585 674 - -
Cpe06g01023 786 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 402 647 IPR027417 -
Cpe06g01023 786 Pfam BAH domain 213 304 IPR001025 GO:0003682
Cpe06g01023 786 SUPERFAMILY FYVE/PHD zinc finger 133 197 IPR011011 -
Cpe06g01023 786 Pfam AAA lid domain 609 642 IPR041083 -
Cpe06g01023 786 SMART BAH_4 119 307 IPR001025 GO:0003682
Cpe06g01023 786 ProSitePatterns Zinc finger PHD-type signature. 147 190 IPR019786 -
Cpe06g01023 786 Gene3D - 388 584 IPR027417 -
Cpe06g01023 786 PANTHER ORIGIN RECOGNITION COMPLEX SUBUNIT 1 95 782 IPR020793 -
Cpe06g01023 786 MobiDBLite consensus disorder prediction 1 54 - -
Cpe06g01023 786 SMART AAA_5 432 585 IPR003593 -
Cpe06g01023 786 CDD AAA 413 588 - -
Cpe06g01023 786 ProSiteProfiles BAH domain profile. 191 307 IPR001025 GO:0003682
Cpe06g01023 786 SMART PHD_3 146 191 IPR001965 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g01023 Cpe-Chr6:10624499 Cpe16g00653 Cpe-Chr16:6903047 3.66E-30 dispersed
Cpe06g01023 Cpe-Chr6:10624499 Cpe19g01203 Cpe-Chr19:8078742 1.99E-06 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49700 PF00004 AAA 5.50E-19 CL0023 Cpe TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g01023 K02603 - csv:101214082 1343.18