Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00001 ATGGCGGCTCGGAGGATATCCTCGCTCTTATCTCGTTCCCTTGCTTCTTCACCTGCTCTCCTTTCCAAAGGGAGGAGGCCTTCCGGTGGCAGAACAACTGGCAAATATAGCACCTCCGCTGCTGTTGAGGATCCAATTACTCCATCTGTGAAAGTAAATTACACCCAGCTGCTAATCAACGGACAGTTTGTGGATTCAGTTTCAGGAAAAACTTTTCCTACACTGGACCCAAGGACTGGAGAAGTCATTGCGAATGTTGCTGAAGGTGACGCCAGAGATATTGATCTTGCAGTTTCTGCTGCACGCAAGGCATTCGATGATGGGCCTTGGCCTAGAATGACTGCTTATGAAAGGTCAAAGATACTTTTGCGATTTGCCGATTTGGTTGAAAAGCATGCCGATGAAGTTGCAGCACTCGAAACTTGGGACAATGGGAAAACATACGAACAGTCAGCCAAATTGGAAGTCCCAATGTTTGTACGCCTCTTCCGATATTATGCGGGGTGGGCCGATAAGATTCACGGACTCACAGTTCCAGCTGATGGCTCGTATCATGTGCAGACCTTGCACGAACCAATTGGTGTTGCGGGTCAGATTATTCCATGGAACTTTCCTCTGCTCATGTTTGCTTGGAAGGTTGGTCCAGCATTAGCATGTGGGAATACTATTGTTCTGAAGACAGCCGAGCAGACACCTTTGTCTGCTATCTATGTGGCTAAGCTATTGCATGAGGCTGGACTTCCTGCGGGCGTTCTCAATATTGTTTCCGGTTATGGACCCACTGCTGGTGCTGCTCTTGCCAGTCATATGGAAGTTGACAAGCTTGCTTTTACTGGATCAACCGAAACAGGGCAGATTGTACTTGAACTAGCTGCAAAAAGCAATCTGAAGCCAGTAACTTTGGAGCTTGGTGGAAAATCCCCTTTCATTGTATGTGAGGATGCTGATGTGGATAAGGCTGTCGAGATGGCACACTTTGCTCTCTTCTTCAACCAGGGACAATGCTGCTGTGCTGGTTCCCGTACTTTTGTTCATGAAAAAGTGTATGATGAGTTTCTAGAAAAATCAAGGAAACGAGCTGCAAACCGCGTTGTTGGTGATCCATTCCTAGGTGGAATTGAGCAAGGTCCTCAGGTGGACGGCGAACAATTCAAAAAGATTTTGAAATATATAAAATCTGGGATTGAAGGTGGAGCCACTCTCGAAGCTGGAGGAGAGAGGTTTGGTTCCAAGGGTTACTATGTCCAGCCAACAGTTTTCTCGAACGTCAAGGATGACATGACAATTGCACAGGAGGAGATTTTTGGTCCTGTACAGACAATCTTGAAATACAAAGAGGTTGAGGAGGTGATAAGGAGGGCAAATGCTAGTCGCTATGGGCTGGCGGCTGGGGTGTTTACTCAAAATATCGACACAGCCAACAGGCTGACGCGTGCGCTGAGAGTTGGGTCTGTGTGGATCAATTGCTTCGATATATTTGATGCTGCGATTCCTTTTGGTGGGTACAAGATGAGCGGACATGGACGAGAAAAGGGTATTTACAGCCTCAGCAATTATCTGCAAGTGAAGGCTGTTGTCACTCCTTTGAACAACCCTACTTGGCTCTAA 1608 46.95 MAARRISSLLSRSLASSPALLSKGRRPSGGRTTGKYSTSAAVEDPITPSVKVNYTQLLINGQFVDSVSGKTFPTLDPRTGEVIANVAEGDARDIDLAVSAARKAFDDGPWPRMTAYERSKILLRFADLVEKHADEVAALETWDNGKTYEQSAKLEVPMFVRLFRYYAGWADKIHGLTVPADGSYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPALACGNTIVLKTAEQTPLSAIYVAKLLHEAGLPAGVLNIVSGYGPTAGAALASHMEVDKLAFTGSTETGQIVLELAAKSNLKPVTLELGGKSPFIVCEDADVDKAVEMAHFALFFNQGQCCCAGSRTFVHEKVYDEFLEKSRKRAANRVVGDPFLGGIEQGPQVDGEQFKKILKYIKSGIEGGATLEAGGERFGSKGYYVQPTVFSNVKDDMTIAQEEIFGPVQTILKYKEVEEVIRRANASRYGLAAGVFTQNIDTANRLTRALRVGSVWINCFDIFDAAIPFGGYKMSGHGREKGIYSLSNYLQVKAVVTPLNNPTWL 535
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 393 4079 - Cp4.1LG07g00090.1 Cpe07g00001 471808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00001 535 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 23 535 - -
Cpe07g00001 535 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 329 340 IPR016160 GO:0016491
Cpe07g00001 535 CDD ALDH_F2BC 52 527 - -
Cpe07g00001 535 MobiDBLite consensus disorder prediction 20 39 - -
Cpe07g00001 535 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 59 523 IPR016162 GO:0016491
Cpe07g00001 535 PANTHER ALDEHYDE DEHYDROGENASE FAMILY 2 MEMBER B4, MITOCHONDRIAL 23 535 - -
Cpe07g00001 535 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 301 308 IPR029510 GO:0016491
Cpe07g00001 535 SUPERFAMILY ALDH-like 51 531 IPR016161 GO:0016491
Cpe07g00001 535 Pfam Aldehyde dehydrogenase family 63 525 IPR015590 GO:0016491
Cpe07g00001 535 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 305 494 IPR016163 GO:0016620
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01139 Cpe-Chr4:9800137 Cpe07g00001 Cpe-Chr7:393 0 dispersed
Cpe05g01029 Cpe-Chr5:6743169 Cpe07g00001 Cpe-Chr7:393 1.64E-79 dispersed
Cpe07g00001 Cpe-Chr7:393 Cpe18g00444 Cpe-Chr18:5463577 0 dispersed
Cpe04g01548 Cpe-Chr4:12131591 Cpe07g00001 Cpe-Chr7:393 0 transposed
Cpe18g00825 Cpe-Chr18:7639618 Cpe07g00001 Cpe-Chr7:393 2.65E-122 transposed
Cpe20g00200 Cpe-Chr20:1157827 Cpe07g00001 Cpe-Chr7:393 1.74E-15 transposed
Cpe11g00003 Cpe-Chr11:14515 Cpe07g00001 Cpe-Chr7:393 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00001 K00128 - csv:101202756 971.844