Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00017 TTGATAAAAGAAGCCCGTGAGCACAGACCCCACCACAGAGTAAGGCAAGTTATGGAACTGGAACTCTGTTTCTTCTTATGCCATGCCGTTTTTACTCTTTTTCCACTCCTCCATCTTGCTTCTGCTACCCTCTCCCCTTCTGGTGTCAACTACGAAGTCGTGGCTTTGATGGCCATCAAAAATGATTTGATAGACCCCCACAATGTTTTGGAGAATTGGGACTCTAATTCAGTGGATCCTTGTAGCTGGAGAATGGTTACATGTTCTCCAGATGGATACGTTTCTGTTCTGGGGCTACCCAGCCAGAGTTTGTCAGGACTCTTATCGCCGGGGATTGGAAACCTCACCAAGTTAGAATCAGTGCTGCTTCAGAACAATGACATTTCGGGGCCAATTCCTGCATCCATTGGAAAGTTAGAGAACCTCCACACTCTTGATCTCTCCAATAATGTATTTAGTGGCCAAATACCCAGTTCCCTTGGGGACTTAAACAAGCTCAACTATTTGCGACTAAATAACAACAGCCTAACTGGACCTTGTCCTGACTCTCTATCCAAAGTTGAAGGTCTCACACTCGTGGACCTTTCATACAACAACTTGAGTGGCTCCTTGCCCAAAATATCAGCAAGAACATTCAAAATTGTTGGTAACCCTCTGATCTGTGGTCCAAACAACTGTTCTTCCATCTTTCCGGAGCCGTTTTTGTTTGCCCCAGATGCTCTAGAAGGAAATTTGGGATTTGGTAAGAGCCACCGCAAGGCAATTGCTTTTGGGGCAAGTTTTAGTGCTGCTTTTATTGTATTAGTCCTTATTGGACTACTTGTCTGGTGGAGATACAGACACAACCAGCAGATTTTCTTTGATGTAAATGATCAATATGACCCAGAGGTACGTTTGGGTCATTTGAGAAGGTACACATTCAAGGAACTTCGGGCAGCAACTGATCATTTCAACTCAAAGAATATCTTGGGAAGAGGTGGGTTTGGAATTGTGTACAAGGGATGCTTAAATGATGGGACTCTGGTAGCGGTTAAAAGGTTGAAGGATTATAACACCGCTGGTGGGGAGATCCAATTTCAGACTGAAGTTGAGATGATAAGTTTAGCTGTGCATCGAAATCTTCTCAAGCTTTTTGGCTTCTGTTCTACTGAGAGTGAAAGACTTCTGGTTTACCCTTTCATGCCCAATGGAAGCGTGAAGAAGTTGCATGAGGAAGGAAAGGTGAATGTGATGGTGGATAAGGATCTAAGAGGTAAGTTCGACAGAGTTGAGTTGGAGGAAATGGTCCAGGTGGCCCTGTTATGCACTCAATTCAATCCGTCTCACCGACCCAAAATGTCTGAAGTATTAAAAATGTTGGAAGGCGATGGGTTAGCTGAGAAATGGGAAGCGTCGCAGCACATAGATGCGCCAAGATACCAGCGAGCGTGCGAGAATCCCCCTCAACGGTACTCAGACTATATAGAAGAATCTTCTCTGATTGTAGAAGCGATGGAGCTTTCAGGCCCCAGATGA 1515 44.69 LIKEAREHRPHHRVRQVMELELCFFLCHAVFTLFPLLHLASATLSPSGVNYEVVALMAIKNDLIDPHNVLENWDSNSVDPCSWRMVTCSPDGYVSVLGLPSQSLSGLLSPGIGNLTKLESVLLQNNDISGPIPASIGKLENLHTLDLSNNVFSGQIPSSLGDLNKLNYLRLNNNSLTGPCPDSLSKVEGLTLVDLSYNNLSGSLPKISARTFKIVGNPLICGPNNCSSIFPEPFLFAPDALEGNLGFGKSHRKAIAFGASFSAAFIVLVLIGLLVWWRYRHNQQIFFDVNDQYDPEVRLGHLRRYTFKELRAATDHFNSKNILGRGGFGIVYKGCLNDGTLVAVKRLKDYNTAGGEIQFQTEVEMISLAVHRNLLKLFGFCSTESERLLVYPFMPNGSVKKLHEEGKVNVMVDKDLRGKFDRVELEEMVQVALLCTQFNPSHRPKMSEVLKMLEGDGLAEKWEASQHIDAPRYQRACENPPQRYSDYIEESSLIVEAMELSGPR 504
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 106748 114794 + Cp4.1LG07g00190.1 Cpe07g00017 471824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00017 504 Gene3D Phosphorylase Kinase; domain 1 286 389 - -
Cpe07g00017 504 Gene3D Transferase(Phosphotransferase) domain 1 390 455 - -
Cpe07g00017 504 ProSitePatterns Protein kinases ATP-binding region signature. 323 345 IPR017441 GO:0005524
Cpe07g00017 504 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 399 504 - -
Cpe07g00017 504 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 28 399 - -
Cpe07g00017 504 Pfam Protein kinase domain 318 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe07g00017 504 Pfam Leucine rich repeat N-terminal domain 50 89 IPR013210 -
Cpe07g00017 504 PANTHER PROTEIN NSP-INTERACTING KINASE 3 28 399 - -
Cpe07g00017 504 PANTHER PROTEIN NSP-INTERACTING KINASE 3 399 504 - -
Cpe07g00017 504 Gene3D Ribonuclease Inhibitor 49 228 IPR032675 -
Cpe07g00017 504 SUPERFAMILY L domain-like 50 212 - -
Cpe07g00017 504 Pfam Leucine rich repeat 117 176 IPR001611 GO:0005515
Cpe07g00017 504 ProSiteProfiles Protein kinase domain profile. 317 504 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe07g00017 504 SUPERFAMILY Protein kinase-like (PK-like) 296 459 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00748 Cpe-Chr1:4335235 Cpe07g00017 Cpe-Chr7:106748 6.57E-16 dispersed
Cpe07g00017 Cpe-Chr7:106748 Cpe13g01002 Cpe-Chr13:8267740 0 dispersed
Cpe18g00586 Cpe-Chr18:6281911 Cpe07g00017 Cpe-Chr7:106748 7.39E-105 dispersed
Cpe18g00805 Cpe-Chr18:7509306 Cpe07g00017 Cpe-Chr7:106748 1.06E-50 dispersed
Cpe11g00021 Cpe-Chr11:117034 Cpe07g00017 Cpe-Chr7:106748 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62488 PF00069 Pkinase 2.80E-12 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00017 - - csv:101208885 676.396