Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00028 ATGAGGGACCAAACCTCTGGCTTGCGATTTAACGACTCCTCTTGTTGCTTGAAGCGGAAAAGACCTCCCAAGATTGAGATCCCTAACGTCTTACGAGAGATTCAAGCCGGAAAACTTGAAGCCACCACTCCCCGAACCGATTCCCTCTCCTCCGCTGACTTTGCGGATCATGTGGGGGTTTTCTCCGTCAAGGGCAAGAAGAGGTTCATGGAAGACACTCACAGGATCATTTCTTGCATGAAAGGCCACTTCAATGATGCCTTTTTTGGCGTTTATGATGGCCATGGAGGCAGGAAGGCAGCCAAATTTGTTGCACAAAATTTGCACAAGAACATACTTCAAGTGGTGGCCAATTGCACGGAATCTGCACAGAAGGAGGAAGCAATTAAAGCTGCTTTCTTGAAAACGGACGGGGACTTCTTGAATCTGGGTTTAGGCAGTGGTGTCTGCTGTGTCACAGCTCTGATACAAGGAGAAGAACTTGTTGTTTCCAATTTGGGAGATTGTAGGGCTGTTCTTTCTAGAGGAGGAGTAGCTGAAGCAGTCACAAAAGACCATAGAGTTGAACAGGAGGATGAAAGGAAACGAATAGAGAACAAGGGTGGATACGTTGAGATTCACAGGGGGGCATGGAGAGTTCATGGAGTTCTTTCTGTTTCTAGAAGCATTGGAGATGCTCATTTGAAGGACTGGGTACTGGCAGAGCCTGATTCAAAGGTCCTACTTCTTAGTGAAGACATGGAATTTCTTGTTCTAGCCACTGATGGATTATGGGAAAAGGTTGGGAACCAAGAGACCGTTGATGTCGTGACACGACTGAGGTTGATGGATAAAAGTTTTGGGCTACCAAAATGTTCCTTGAGAAGCACTAGCCATGCCCATTGCTCTGTGAACCTAAGTCCATCAAAACTGCGGAGAGTTTCTTTGGTCACGCAACCGAAAGGAGGGGGGATGGACCAATCTCCAATCTGTGACAAGGCAATGGATAGCTCTGAAGAAGCTGAATATGACTATTCTTGTGAAACTGAAAGTCCTAGAACAAAATCAAGGAGAATATCATTGGTCAGACATAAAAAGATGAAGACAGAATCTTCACCTAAGGAGAATAATGATAGCTATAGGAAGAGACCCACTTCCAGTAGACTTGTGGCTGCTTGTAAGGAACTTGTAGATCTAGCTCTAAGTAGAGGTAGCCTGGATGACATTACCGTAATAATTGTCGACTTAAGCCACTTTAGGTGCGAGAGTCGGTCTGAGAATGTTCCTTCAGACAAGTGGGGTTATGCTTCATTGTTTTATACCTTCAAAGTAATCCTAGTTGTTGTTACTCATAAAGTGATACTGACGCTGGACCATTTCCTTTGCCACCTAAACTACAGTGATCTTTATATATCTCCACATTATGTATATTTCAGATTCCTTGCCAAGTCACTTTTCCCAACAGTTCCACTGCAAAGTGGAGGAGAAACCCAGACAAACTCCATTTTCAACTTCCAAGCACAATCAGCTTTCTTGGATTCGTACCAAGCCATGCATGACTCCATCGGAATTCCTGCTTGCTTCTCATTTGGGGAGAGGCCAAGTAATGATCCAGCTTCAGTAATCAGGCCAGGTCAGAGTGTGTTTATGTCAGTATATCAAACAAAGATCGTTGGTCAGTGTCGTCTCATCACAGTCACTTGGTGTAAGAATCTGTTACTTCATGGTCTTTCCATCTGTGTTCAAGGACCAGAAGGAAACCAGCAATATCAGTGTAAGGTTGAGATGAAGCCATGGTACTTCTGGAGAAAACAAGGTTCTAAGCACTTTGAAGTCGATGGTCGAGCTGTGGATGTATTCTGGGACCTCAAGAGTGCAAAATTCAATGGAGAGACAGAGCCACAGTCGGATTACTACGTGGCCGTTGTGTGTGAAGAAGAAGTTGTTTTACTTATTGGGGATCTCAAGAAAGATGCCTTCAGAAAGACAGGTTGTCGGCCAGCTTTGATTGAACCCACTCTAGTTTCAAAGAAGGAACATGTATTTGGGAAGAAAATGTTCTCCACCAGAATCCAGTTCCATGAGAAAGGCAAGTTCCACACCATCTCAATTGAGTTCATCAACATCAATAATCCCAGTTTTTCTGATTCATTCGATCCAGAACTGGAGATGAGGATCGACGGGCAACCAGCAATCAAAATTAAGCACCTTCACTGGAAGTTCAGAGGCAATGAATCTGTATTAATCAGCAGAACAAGACTAGAAGTTTACTGGGATGTCCATGATTGGCTGTTTGGTTCAGGTTCCAGGTACGGGCTATTCATATTCAGGCCAATGTCATCATGGTCTGAATCTCCATCGTCATCACTTGCATCAACGACATCGCTACCTGCTCCATCCTCTTCTTTAACACCAACAGGAATGTCCATTAGAGAAGTGATTTCTACTTCTGGGGAGGATGAAAATGCAGCGGCAGGAGTGTCATCCAAATTCTGCTTATTTCTGTATGCTTGGAAGATGGAATGA 2505 44.11 MRDQTSGLRFNDSSCCLKRKRPPKIEIPNVLREIQAGKLEATTPRTDSLSSADFADHVGVFSVKGKKRFMEDTHRIISCMKGHFNDAFFGVYDGHGGRKAAKFVAQNLHKNILQVVANCTESAQKEEAIKAAFLKTDGDFLNLGLGSGVCCVTALIQGEELVVSNLGDCRAVLSRGGVAEAVTKDHRVEQEDERKRIENKGGYVEIHRGAWRVHGVLSVSRSIGDAHLKDWVLAEPDSKVLLLSEDMEFLVLATDGLWEKVGNQETVDVVTRLRLMDKSFGLPKCSLRSTSHAHCSVNLSPSKLRRVSLVTQPKGGGMDQSPICDKAMDSSEEAEYDYSCETESPRTKSRRISLVRHKKMKTESSPKENNDSYRKRPTSSRLVAACKELVDLALSRGSLDDITVIIVDLSHFRCESRSENVPSDKWGYASLFYTFKVILVVVTHKVILTLDHFLCHLNYSDLYISPHYVYFRFLAKSLFPTVPLQSGGETQTNSIFNFQAQSAFLDSYQAMHDSIGIPACFSFGERPSNDPASVIRPGQSVFMSVYQTKIVGQCRLITVTWCKNLLLHGLSICVQGPEGNQQYQCKVEMKPWYFWRKQGSKHFEVDGRAVDVFWDLKSAKFNGETEPQSDYYVAVVCEEEVVLLIGDLKKDAFRKTGCRPALIEPTLVSKKEHVFGKKMFSTRIQFHEKGKFHTISIEFININNPSFSDSFDPELEMRIDGQPAIKIKHLHWKFRGNESVLISRTRLEVYWDVHDWLFGSGSRYGLFIFRPMSSWSESPSSSLASTTSLPAPSSSLTPTGMSIREVISTSGEDENAAAGVSSKFCLFLYAWKME 834
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 147992 152766 + Cp4.1LG07g00210.1 Cpe07g00028 471835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00028 834 CDD PP2Cc 57 409 IPR001932 -
Cpe07g00028 834 Pfam Protein phosphatase 2C 58 273 IPR001932 -
Cpe07g00028 834 SUPERFAMILY PP2C-like 53 410 IPR036457 -
Cpe07g00028 834 PANTHER EXPRESSED PROTEIN 514 834 IPR008586 -
Cpe07g00028 834 MobiDBLite consensus disorder prediction 358 375 - -
Cpe07g00028 834 Pfam Plant protein of unknown function (DUF868) 538 832 IPR008586 -
Cpe07g00028 834 SMART PP2C_4 47 407 IPR001932 -
Cpe07g00028 834 PANTHER PHOSPHATASE 2C, PUTATIVE-RELATED 514 834 - -
Cpe07g00028 834 MobiDBLite consensus disorder prediction 347 376 - -
Cpe07g00028 834 ProSitePatterns PPM-type phosphatase domain signature. 88 96 IPR000222 GO:0043169
Cpe07g00028 834 Gene3D - 45 415 IPR036457 -
Cpe07g00028 834 ProSiteProfiles PPM-type phosphatase domain profile. 57 409 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01028 Cpe-Chr1:6082343 Cpe07g00028 Cpe-Chr7:147992 5.57E-72 dispersed
Cpe07g00028 Cpe-Chr7:147992 Cpe20g00552 Cpe-Chr20:3244110 4.05E-75 dispersed
Cpe20g00876 Cpe-Chr20:7869092 Cpe07g00028 Cpe-Chr7:147992 2.92E-57 dispersed
Cpe11g00036 Cpe-Chr11:176015 Cpe07g00028 Cpe-Chr7:147992 1.61E-60 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00028 - - cpap:110817195 783.097