Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00036 AACAGAGCGAACACAGCCATGGCAAACCCCATTGTTCTTCTCATAACCTTCGTTCTTCTTCTCCATATGTACTCTGCTTCTTCCTCTCCAGTCGCCGATCCTCAACAAGTGGTTGAAGAAGTTCTCACGAGCATCAACAATGCAACAAAAAGAAGGAACTTGGGGTTCCTCTCCTGCGGAACTGGAAACCCAATTGATGATTGTTGGAGGTGCGACCCCGATTGGGAGAAGAATCGAAAGCGCCTAGCCGACTGCGCCATTGGGTTCGGGAAGGGAGCCATCGGCGGCAGAAATGGAAAATTCTACATTGTCACTGACCCATCTGACAAGGACGTGGTGAACCCAAAACCAGGAACTCTCCGCCATGCCGTAATCCAAAAAGAACCTTTATGGATCACCTTCAAACGTGACATGGTCATCAAACTAAAAGCAGAGCTGATCATGAACTCTTTCAAAACCATCGACGGTCGCGGCAGATCAGTCCACATCGCCGGTGGGCCATGCATTACAATTCAGTACGTGACGAACATTATAATCCACGGCATTAACATTCACGACTGCAAGCAAGGAGGGAACATGTACATTAGAGATTCGCCGGACCATTACGGTTGGAGGACTCTGTCGGACGGGGATGGGGTTTCGATATTTGGGGGCAGCCATATTTGGATCGACCATTGCTCGCTGTCGAATTGCCAAGATGGGTTGATTGATGCGATTCGTGGGTCTACGGCTATCACAATTTCAAACAATTATATGACCCACCATAACAAAGTTATGCTTTTGGGACATAGTGATTCGTACACTCAAGACAAGAACATGCAAGTCACCATTGCTTTTAACCATTTTGGCGAGGGGCTGGTGCAAAGAATGCCACGATGCCGACATGGGTATTTCCATGTGGTGAATAATGACTATACCCATTGGATTATGTACGCCATTGGTGGAAGTGCATCGCCCACAATCAATAGCCAAGGGAACAGATACCTTGCTCCTGATAACCGAGTTAGAAAAGAGGTGACAAAGCGTGAGGCTGCAGCAGAGAGCAAATGGAAGAATTGGAATTGGAAATCAGAGGGAGATTTGATGTTGAATGGAGCGTTCTTCAGGAAGTCCGGTGCCGGAGCGTCGTCTAGCTATGCGAGGGCGTCCAGCTTGAGTGCCAAGCCATCGTCGTTGGTGAGTTCAATGACGGCAGGAGCAGGAGTGCTGAAATGCTCAAAGGGCTCCCCATGCTCTACTTGA 1242 48.55 NRANTAMANPIVLLITFVLLLHMYSASSSPVADPQQVVEEVLTSINNATKRRNLGFLSCGTGNPIDDCWRCDPDWEKNRKRLADCAIGFGKGAIGGRNGKFYIVTDPSDKDVVNPKPGTLRHAVIQKEPLWITFKRDMVIKLKAELIMNSFKTIDGRGRSVHIAGGPCITIQYVTNIIIHGINIHDCKQGGNMYIRDSPDHYGWRTLSDGDGVSIFGGSHIWIDHCSLSNCQDGLIDAIRGSTAITISNNYMTHHNKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWIMYAIGGSASPTINSQGNRYLAPDNRVRKEVTKREAAAESKWKNWNWKSEGDLMLNGAFFRKSGAGASSSYARASSLSAKPSSLVSSMTAGAGVLKCSKGSPCST 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 187888 189303 - Cp4.1LG07g00520.1 Cpe07g00036 471843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00036 413 SMART amb_all 137 334 IPR002022 -
Cpe07g00036 413 Pfam Pectate lyase 172 326 IPR002022 -
Cpe07g00036 413 PRINTS Pollen allergen Amb family signature 289 308 IPR018082 -
Cpe07g00036 413 PRINTS Pollen allergen Amb family signature 145 161 IPR018082 -
Cpe07g00036 413 PRINTS Pollen allergen Amb family signature 85 102 IPR018082 -
Cpe07g00036 413 PRINTS Pollen allergen Amb family signature 382 405 IPR018082 -
Cpe07g00036 413 PRINTS Pollen allergen Amb family signature 311 330 IPR018082 -
Cpe07g00036 413 PRINTS Pollen allergen Amb family signature 109 134 IPR018082 -
Cpe07g00036 413 PRINTS Pollen allergen Amb family signature 209 230 IPR018082 -
Cpe07g00036 413 PRINTS Pollen allergen Amb family signature 353 377 IPR018082 -
Cpe07g00036 413 PANTHER PECTATE LYASE 10 407 - -
Cpe07g00036 413 Gene3D - 62 404 IPR012334 -
Cpe07g00036 413 SUPERFAMILY Pectin lyase-like 44 405 IPR011050 -
Cpe07g00036 413 PANTHER PECTATE LYASE 18-RELATED 10 407 IPR045032 GO:0030570
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00036 Cpe-Chr7:187888 Cpe20g00339 Cpe-Chr20:1918062 0 dispersed
Cpe11g00043 Cpe-Chr11:220647 Cpe07g00036 Cpe-Chr7:187888 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00036 K01728 - csv:101208076 709.138