Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00041 ATGGAAAATGGCTTCTCTTCGCCTCGAAGCGATGTGTTTCCTGTCGGTCTTCGTGTTCTTGTTGTTGATGATGATCCAACATGGCTCAAAATCCTGGAAAAGATGCTCAAAAAGTGCTCTTATGAAGTGACTACATGTTGCCTGGCAAGGGAGGCTCTAAGCCTGCTAAGGGAGAGAAAAGATGGATACGACATCGTAATCAGCGACGTAAACATGCCCGACATGGACGGTTTTAAACTCCTCGAGCATGTAGGATTAGAAATGGACCTACCAGTTATCAAGTCCTCATTTCTTATGTATAAGTTCGTCTTCCTCCATGCAGTGATGTCAGTTGATGGAGAAACAAGCAGAGTAATGAAAGGGGTTCAACATGGGGCTTGTGATTATCTTCTAAAGCCAATACGTATGAAAGAACTTAGGAATATATGGCAGCATGTACTTCGAAAGAAGATTCAAGAGGGAAGAGATATTGAAGGCCATGATGTTTTTGAAGGCCTTCAAATCCTTAGAAATGGATCAGATAGGTATGATGATAGCCAGTTCCTTAGAGTAGAGGAGCTCTTTTCAGTGAGGAAAAGAAAAGATGTTGATAAGTACGAGGAAAAAGAGTTTGGTGAGACATGTTCTACAAAGAAAGCCAGAGTTGTTTGGTCGGTTGATCTGCACCAGAAATTTGTTGAAGCAGTAAACCAGATAGGCTTTGACAAAGTTGGCCCTAAGAAGATTCTTGATCTGATGAATGTCCCATGGCTAACAAGGGAAAATGTAGCTAGCCATTTGCAGAAGTATCGCCTCTATTTGAGTCGACTGCAGAAAGAAAATGATCCAAAAGCTTGCTTTGTTGTTGGGATGAAACAGACCGATTCGAGTTTGAAGGATGGAGATGGAAACTTCAGCGTTTGTAGCTCGTTAGTTGTGCCACAAACCGATGTCACGAATAGCAGCTTCAGTTTTTCAGGTGATAACTTTCTTCAGAATGTGGATTCCATAGGCTGTGAAGCTGATAGGAAAAGGGTTGTTCAAGAGCAAACATCAGAGCCAAAAAGAGCTGCTGCTACTGAACTGATAAAGACACGGTGTACCCACATGAAATTCAACAACTCGTTTGCCTCTGTTGAATCTGAAGGCAAGTTAGCAGCATGTTACCCTTGGGTTGAAGCTCCACAGATGAAGCTCAAACAAGAAAGCAAGCCACATCAAGTTCAAATCAACCAACTACCATCGGTTTCGTCCATTAGTTCTGGACGGTCAGCAACAGAGAAAGACAAAGGAAGCTCCATTGAAAGTAAGGCTCCATTTTCAGAGGACTGCAGCCAACAGATGGTCCATCTAAACCCACCAAAAGCTACAACTGATTCATTTTCTGGCAAGGCTAAGAGTTTCGATGAGATCAATGACCATTTTGAGCCTATTTCAACTGCTACAGCTCCATTGGGCGTGAAAAACCAGAATGTGATCGATCTTAGCAGCATTTCAACTGATTTAGGAAGTGGGTTTCCTTTTTCAAGCTTTGATGAAGATTTGCAGGGCTATTTGATTCAAGATGGTTGTTACCCAAAGAACCTTGAACAGATTATAGAGTTTCCAGATTATGGTGATCCAGGCATCTTCACTGAAGGTCCGACTCACCTTTATGATGCAATGAGGTTTGGCTATGAGTATTCCTATGACCCAACTGAGTATCCAGTGATAGATGAAGGCCTATTCATCGCATGA 1716 42.31 MENGFSSPRSDVFPVGLRVLVVDDDPTWLKILEKMLKKCSYEVTTCCLAREALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIKSSFLMYKFVFLHAVMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVLRKKIQEGRDIEGHDVFEGLQILRNGSDRYDDSQFLRVEELFSVRKRKDVDKYEEKEFGETCSTKKARVVWSVDLHQKFVEAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLSRLQKENDPKACFVVGMKQTDSSLKDGDGNFSVCSSLVVPQTDVTNSSFSFSGDNFLQNVDSIGCEADRKRVVQEQTSEPKRAAATELIKTRCTHMKFNNSFASVESEGKLAACYPWVEAPQMKLKQESKPHQVQINQLPSVSSISSGRSATEKDKGSSIESKAPFSEDCSQQMVHLNPPKATTDSFSGKAKSFDEINDHFEPISTATAPLGVKNQNVIDLSSISTDLGSGFPFSSFDEDLQGYLIQDGCYPKNLEQIIEFPDYGDPGIFTEGPTHLYDAMRFGYEYSYDPTEYPVIDEGLFIA 571
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 203304 207049 - Cp4.1LG07g00480.1 Cpe07g00041 471848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00041 571 MobiDBLite consensus disorder prediction 393 438 - -
Cpe07g00041 571 SUPERFAMILY CheY-like 16 154 IPR011006 -
Cpe07g00041 571 Pfam Myb-like DNA-binding domain 214 264 IPR001005 -
Cpe07g00041 571 SMART REC_2 17 143 IPR001789 GO:0000160
Cpe07g00041 571 Gene3D - 17 193 - -
Cpe07g00041 571 Gene3D - 208 271 - -
Cpe07g00041 571 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 212 265 IPR006447 GO:0003677
Cpe07g00041 571 PANTHER TWO-COMPONENT RESPONSE REGULATOR 2 528 IPR045279 GO:0009736
Cpe07g00041 571 SUPERFAMILY Homeodomain-like 210 269 IPR009057 -
Cpe07g00041 571 CDD REC_typeB_ARR-like 19 147 - -
Cpe07g00041 571 Pfam Response regulator receiver domain 19 142 IPR001789 GO:0000160
Cpe07g00041 571 MobiDBLite consensus disorder prediction 395 420 - -
Cpe07g00041 571 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR11 2 528 - -
Cpe07g00041 571 ProSiteProfiles Response regulatory domain profile. 18 147 IPR001789 GO:0000160
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00041 Cpe-Chr7:203304 Cpe17g00047 Cpe-Chr17:301283 6.96E-92 dispersed
Cpe11g00049 Cpe-Chr11:251288 Cpe07g00041 Cpe-Chr7:203304 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49701 PF00072 Response_reg 5.50E-18 CL0304 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00041 - K14491 csv:101204370 912.138