Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe07g00047 | ATGATAGGTATGTACTTGTCTGATAAGCCTCGCCCAATCGATATTTACAAAGAAGAAGGCAGCAGAGATATGATGATCGAGGTGGCTCCTAATGGCGACCATCATATTCAACCTCATCAGCCACAACAGACTCATCAGCAGCACCAAATGATGCTCGGCGATAGCAGTGGTGAGGATCATGAAGTCAAGGCGCCGAAGAAGCGGGCGGAGACTTGGGTTCAGGATGAGACGAGAAGCTTAATTTCACTACGGAGGGGGATGGATGGATTGTTCAATACCTCGAAATCGAACAAGCATTTGTGGGAGCAGATATCGGCTAAGATGAGGGAAAGAGGCTTTGATCGCTCTCCGACTATGTGTACTGATAAGTGGAGGAACTTGCTCAAGGAGTTCAAGAAGGCTAAACACCACGACAGGGGAAGTGGCTCTGCTAAGATGTCGTATTACAAGGAGATTGAAGAAATTCTGAAGGAGAGAAGCAAAAATGCGCAGTACAAGAGCCCTACGCCACCCAAGATTGATTCCTACATACAATTCTCAGACAAAGGAATTGAGGATAATGCTCTATCGTTTGGACCTGTCGAAGCTGGTGGCAGGCCCTCACTCAATCTTGAAAGACAGCTGGATCACGATGGACATCCCCTTGCCATCACAGCAGCTGATGCAGTTGCTGCAACAGGCATCCCACCTTGGAATTGGAGAGAGGCACCCGGAAATGGGTTGGCTGTTAAAATCTGCCTCTATGATGAATCTGACCACTTACCAGTACATACTGAAGAGAAAATATTTTACACTGAAGATGAGTACCGAGAATTTTTAGCTCGTCGGGCCTGGACGTGCCTTCGGGAGTTTGATGGGTATAGAAACATCGATAATATGGATGATCTACGTCCTGGTGCATTATACCGCGCAGCCAAACAGAAAGCAATGGAAAATGAAAGGGAAAAGAAAGAAACCTCAGGCTTTAACCATCTGTTGGCAGTGGCCATGGCAGCAGTGAGAAGAGAATGTATGTGA | 1017 | 46.8 | MIGMYLSDKPRPIDIYKEEGSRDMMIEVAPNGDHHIQPHQPQQTHQQHQMMLGDSSGEDHEVKAPKKRAETWVQDETRSLISLRRGMDGLFNTSKSNKHLWEQISAKMRERGFDRSPTMCTDKWRNLLKEFKKAKHHDRGSGSAKMSYYKEIEEILKERSKNAQYKSPTPPKIDSYIQFSDKGIEDNALSFGPVEAGGRPSLNLERQLDHDGHPLAITAADAVAATGIPPWNWREAPGNGLAVKICLYDESDHLPVHTEEKIFYTEDEYREFLARRAWTCLREFDGYRNIDNMDDLRPGALYRAAKQKAMENEREKKETSGFNHLLAVAMAAVRRECM | 338 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 224772 | 229509 | + | Cp4.1LG07g00460.1 | Cpe07g00047 | 471854 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe07g00047 | 338 | PANTHER | - | 239 | 304 | - | - | |
Cpe07g00047 | 338 | CDD | GT1 | 70 | 135 | - | - | |
Cpe07g00047 | 338 | PANTHER | TRIHELIX TRANSCRIPTION FACTOR GT-4 | 8 | 237 | - | - | |
Cpe07g00047 | 338 | SMART | sant | 68 | 130 | IPR001005 | - | |
Cpe07g00047 | 338 | Pfam | Myb/SANT-like DNA-binding domain | 71 | 155 | IPR044822 | - | |
Cpe07g00047 | 338 | PANTHER | TRIHELIX TRANSCRIPTION FACTOR GT-4 | 239 | 304 | - | - | |
Cpe07g00047 | 338 | PANTHER | - | 8 | 237 | - | - | |
Cpe07g00047 | 338 | ProSiteProfiles | Myb-like domain profile. | 64 | 128 | IPR001005 | - | |
Cpe07g00047 | 338 | Gene3D | - | 72 | 134 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe07g00047 | Cpe-Chr7:224772 | Cpe08g01227 | Cpe-Chr8:8927691 | 5.79E-12 | dispersed | |
Cpe11g00054 | Cpe-Chr11:285130 | Cpe07g00047 | Cpe-Chr7:224772 | 1.33E-34 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
49702 | PF13837 | Myb_DNA-bind_4 | 7.70E-21 | CL0123 | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe07g00047 | - | - | csv:101222888 | 437.958 |