Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00047 ATGATAGGTATGTACTTGTCTGATAAGCCTCGCCCAATCGATATTTACAAAGAAGAAGGCAGCAGAGATATGATGATCGAGGTGGCTCCTAATGGCGACCATCATATTCAACCTCATCAGCCACAACAGACTCATCAGCAGCACCAAATGATGCTCGGCGATAGCAGTGGTGAGGATCATGAAGTCAAGGCGCCGAAGAAGCGGGCGGAGACTTGGGTTCAGGATGAGACGAGAAGCTTAATTTCACTACGGAGGGGGATGGATGGATTGTTCAATACCTCGAAATCGAACAAGCATTTGTGGGAGCAGATATCGGCTAAGATGAGGGAAAGAGGCTTTGATCGCTCTCCGACTATGTGTACTGATAAGTGGAGGAACTTGCTCAAGGAGTTCAAGAAGGCTAAACACCACGACAGGGGAAGTGGCTCTGCTAAGATGTCGTATTACAAGGAGATTGAAGAAATTCTGAAGGAGAGAAGCAAAAATGCGCAGTACAAGAGCCCTACGCCACCCAAGATTGATTCCTACATACAATTCTCAGACAAAGGAATTGAGGATAATGCTCTATCGTTTGGACCTGTCGAAGCTGGTGGCAGGCCCTCACTCAATCTTGAAAGACAGCTGGATCACGATGGACATCCCCTTGCCATCACAGCAGCTGATGCAGTTGCTGCAACAGGCATCCCACCTTGGAATTGGAGAGAGGCACCCGGAAATGGGTTGGCTGTTAAAATCTGCCTCTATGATGAATCTGACCACTTACCAGTACATACTGAAGAGAAAATATTTTACACTGAAGATGAGTACCGAGAATTTTTAGCTCGTCGGGCCTGGACGTGCCTTCGGGAGTTTGATGGGTATAGAAACATCGATAATATGGATGATCTACGTCCTGGTGCATTATACCGCGCAGCCAAACAGAAAGCAATGGAAAATGAAAGGGAAAAGAAAGAAACCTCAGGCTTTAACCATCTGTTGGCAGTGGCCATGGCAGCAGTGAGAAGAGAATGTATGTGA 1017 46.8 MIGMYLSDKPRPIDIYKEEGSRDMMIEVAPNGDHHIQPHQPQQTHQQHQMMLGDSSGEDHEVKAPKKRAETWVQDETRSLISLRRGMDGLFNTSKSNKHLWEQISAKMRERGFDRSPTMCTDKWRNLLKEFKKAKHHDRGSGSAKMSYYKEIEEILKERSKNAQYKSPTPPKIDSYIQFSDKGIEDNALSFGPVEAGGRPSLNLERQLDHDGHPLAITAADAVAATGIPPWNWREAPGNGLAVKICLYDESDHLPVHTEEKIFYTEDEYREFLARRAWTCLREFDGYRNIDNMDDLRPGALYRAAKQKAMENEREKKETSGFNHLLAVAMAAVRRECM 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 224772 229509 + Cp4.1LG07g00460.1 Cpe07g00047 471854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00047 338 PANTHER - 239 304 - -
Cpe07g00047 338 CDD GT1 70 135 - -
Cpe07g00047 338 PANTHER TRIHELIX TRANSCRIPTION FACTOR GT-4 8 237 - -
Cpe07g00047 338 SMART sant 68 130 IPR001005 -
Cpe07g00047 338 Pfam Myb/SANT-like DNA-binding domain 71 155 IPR044822 -
Cpe07g00047 338 PANTHER TRIHELIX TRANSCRIPTION FACTOR GT-4 239 304 - -
Cpe07g00047 338 PANTHER - 8 237 - -
Cpe07g00047 338 ProSiteProfiles Myb-like domain profile. 64 128 IPR001005 -
Cpe07g00047 338 Gene3D - 72 134 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00047 Cpe-Chr7:224772 Cpe08g01227 Cpe-Chr8:8927691 5.79E-12 dispersed
Cpe11g00054 Cpe-Chr11:285130 Cpe07g00047 Cpe-Chr7:224772 1.33E-34 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49702 PF13837 Myb_DNA-bind_4 7.70E-21 CL0123 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00047 - - csv:101222888 437.958