Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00054 ATGGATATTACGGAGGTTGAGGAAAGTCTATTTGCAGCACGTGATGCCAAGCTACATGGAGGAATGTGCAAGGCTCTTTCTTCAATATATTGTAAAGCGTCATCAATTTTCCCTTCATTGGAAGAAGCACGACCTCGGAGCAAATCTGGTATCCAGGCATTATGCTCGTTGCATGTGGCACTCGAAAAAGCCAAAAATACTCTCCTACATTGTACAGAGAGCAGCAAACTTTATTTGGCTATAACTGGGGACTCTGTCCTGTTGAAGTTTAAGAAGGTAAAATGTGCTCTACAGGATAGCCTTCAACGCGTTGAAGATATTGTTCCACAGTCAATTGGCCATCAGGTTCGGGAGATTATGAAGGAACTGGATAGTACTCAATTTTTCCTAGACCCTTTGGAGAAGCAAGTTGGTGAGGACATTATTGTATTGCTCCAACGAGGACGAACATTTAGCAACACTGTTGACAACAATGAGCTTGAGACTTTTCACCAAGCTGCTATAAGACTTGGAATAAACTCCTCTAGAGCAGCTCTTGCAGAGAGAAGAGCACTAAAGAAATTAATAGATCGGTCTCGCACTGAAGAGGACAAGAGGAAGGAATCAATTGTTGCATATCTTTTGCATCTCATGAGGAAGTACTCCAAGTTATTTAGAAGCGAGGTATCTGATGACAATGACTCGCAGGGTTCTGGACCTTGTTCACCCACTGTTCAGAGCACTCTCGAGGATAGTGGACCTGGTGGAAATGGACAAGCCTTTGAAAGGCAGCTAACAAAGCTTGGTACTTTTAACATGAAGCCAACAAATCTCAGATTGGAGCAGATTCCCCTTCCACCTGATGAGTTGAGGTGTCCTATATCATTGCAGCTTATGTATGATCCGGTCATAATTGCTTCCGGGCAAACATATGAAAGGATTTGCATAGAGAAGTGGTTAAGTGATGGGCATAACACCTGCCCAAAAACTCAACAGAAACTTTCTCATTTTTCATTGACGCCAAATTACTGTGTTAAGGGCCTGATTGCAAACTGGTGTGAACAGAATGGAGTTCCTGCTCCTGATGGGCCTCCAGATAGTCTTGACCTCAATTACTGGAGGCTATCTGAATCAGTGTCTCTAAATTCGTCGCCTGTGGACACAGTTGGTTCTTGTAAGTTGAAAGATGCTAAATTTGTTCTGGTTGAAGAAAAGGGTACAACCGAGGAGATCAAAGAAAATGTAGTGGATGACAACCCTGCTGAAGACCAGGAGTCCGTCACAAATATGCTTATTAGATACGAACAGTATTTGAAAGTTTTGAATGAAGAAGCTGACTTGAGGAAAAAGTTGGAAGTTGTGGAGCAAATAAGACTGTTGCTCAAGGATGATGATGAGGCGAGGATTCTTATGGGAGCTAATGGATTTGTCCAGGGACTTCTACGCTACTTGGAGAGAGCTGTGCAAGAACAAGATGTTAAGGCTCAGGAAAGTGCAGCAATGGCTCTTTTCAACCTTGCAGTCAACAACGACAGGAACAAGGAAATAATGCTGGCAGAAGGTGTGATTTCATTGTTGGAGGAAATGATTATGAACCCAGATTGCCACGGATCTGCAACGGCCCTTTATCTCAATGTCTCCTGTCTGGAAGAAGCCAAATCTATTATCGGCTCAAGTTGTGCAGTCCCGTTCTTGACTCAACTCCTCCACACTGATACTGAAACACTATGCAAACTTGATGCACTTCACACACTTTACAATCTCTCAACCGTGCCCTCCAATATTCCCAACCTGGTTTCTTCTGGAATCATCAGGGGACTTCAATCCCTTCTTGCTGCCCCTCTCGGTCGAACATGGACCGAAAAGTGCATAGCTATCTCCATAAATTTGGCTTCAGATGAATCAGGTATAGATCAAATGGCATCTACTCCAGAACTCATCAGTGGGTTGGCAGCAATATTAGACAATGGTGAATCCATTGAGCAGGAACAAGCAGTTGCTTGTCTCTTGATTCTTTGCAACGGGAGTGAGAGGTGCAGTGAGATGGTCCTACAGGAAGGCGTAATTCCCGGGCTGGTGTCGATATCTGTGAATGGGACAGCAAGAGGCAAAGAGAAGGCTCAAAAGCTTCTGATGTTGTTCAGGGTGCAACGACAACAGGAGCCACCAGCACTAACACCAACACGGTCACCAACACCGTCACCAACACCAACACCAACACCGTCACGGACACCGTCACCGTCACCGTCACCGACACCGACACCAACACGAACACCGGCACCAACACGAACACCGGCACCAACACGGAAACCATCACTGAAACTGACAAAGCGATCGGAGAATAGCGGGACATCCATGCCTGTGGCGGAATCAAAGCCACTGTGCAAGACAATTACAAGAAAAAAATCAATAAGAGCTTTCAGCTTTTTATGGAAAACCAAAGGCTGTTCAGTGTACCAATGA 2442 44.8 MDITEVEESLFAARDAKLHGGMCKALSSIYCKASSIFPSLEEARPRSKSGIQALCSLHVALEKAKNTLLHCTESSKLYLAITGDSVLLKFKKVKCALQDSLQRVEDIVPQSIGHQVREIMKELDSTQFFLDPLEKQVGEDIIVLLQRGRTFSNTVDNNELETFHQAAIRLGINSSRAALAERRALKKLIDRSRTEEDKRKESIVAYLLHLMRKYSKLFRSEVSDDNDSQGSGPCSPTVQSTLEDSGPGGNGQAFERQLTKLGTFNMKPTNLRLEQIPLPPDELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHNTCPKTQQKLSHFSLTPNYCVKGLIANWCEQNGVPAPDGPPDSLDLNYWRLSESVSLNSSPVDTVGSCKLKDAKFVLVEEKGTTEEIKENVVDDNPAEDQESVTNMLIRYEQYLKVLNEEADLRKKLEVVEQIRLLLKDDDEARILMGANGFVQGLLRYLERAVQEQDVKAQESAAMALFNLAVNNDRNKEIMLAEGVISLLEEMIMNPDCHGSATALYLNVSCLEEAKSIIGSSCAVPFLTQLLHTDTETLCKLDALHTLYNLSTVPSNIPNLVSSGIIRGLQSLLAAPLGRTWTEKCIAISINLASDESGIDQMASTPELISGLAAILDNGESIEQEQAVACLLILCNGSERCSEMVLQEGVIPGLVSISVNGTARGKEKAQKLLMLFRVQRQQEPPALTPTRSPTPSPTPTPTPSRTPSPSPSPTPTPTRTPAPTRTPAPTRKPSLKLTKRSENSGTSMPVAESKPLCKTITRKKSIRAFSFLWKTKGCSVYQ 813
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 256630 261717 - Cp4.1LG07g00500.1 Cpe07g00054 471861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00054 813 MobiDBLite consensus disorder prediction 224 247 - -
Cpe07g00054 813 Gene3D - 610 706 IPR011989 -
Cpe07g00054 813 SMART Ubox_2 282 345 IPR003613 GO:0004842|GO:0016567
Cpe07g00054 813 SMART arm_5 502 541 IPR000225 GO:0005515
Cpe07g00054 813 SMART arm_5 457 501 IPR000225 GO:0005515
Cpe07g00054 813 SMART arm_5 542 583 IPR000225 GO:0005515
Cpe07g00054 813 Gene3D - 428 608 IPR011989 -
Cpe07g00054 813 MobiDBLite consensus disorder prediction 719 759 - -
Cpe07g00054 813 CDD RING-Ubox_PUB 283 325 IPR045210 -
Cpe07g00054 813 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 468 514 IPR000225 GO:0005515
Cpe07g00054 813 SUPERFAMILY RING/U-box 279 355 - -
Cpe07g00054 813 MobiDBLite consensus disorder prediction 221 253 - -
Cpe07g00054 813 MobiDBLite consensus disorder prediction 713 783 - -
Cpe07g00054 813 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 278 352 IPR013083 -
Cpe07g00054 813 Pfam U-box domain 280 349 IPR003613 GO:0004842|GO:0016567
Cpe07g00054 813 PANTHER U BOX DOMAIN-CONTAINING 1 735 - -
Cpe07g00054 813 ProSiteProfiles U-box domain profile. 278 352 IPR003613 GO:0004842|GO:0016567
Cpe07g00054 813 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 735 - -
Cpe07g00054 813 SUPERFAMILY ARM repeat 396 707 IPR016024 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00054 Cpe-Chr7:256630 Cpe14g00527 Cpe-Chr14:3329480 1.66E-87 dispersed
Cpe01g01608 Cpe-Chr1:9816481 Cpe07g00054 Cpe-Chr7:256630 0 wgd
Cpe11g00066 Cpe-Chr11:355247 Cpe07g00054 Cpe-Chr7:256630 0 wgd
Cpe07g00054 Cpe-Chr7:256630 Cpe09g00579 Cpe-Chr9:4001540 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00054 - - cpep:111798982 1506.12