Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00090 ATGGGCCGTGGAGTTAGCAGTGGTGGTGGGCAGAGCTCATTGGGGTATCTGTTTGGAAGTGGAGAATCTCCCAATGCAGGTGCCCCCAAAGGTGGCCAAGCACCAGCTCCAGCACCAGCACCAGCACCAGCACCAGCACCACGTTCTAATGAAGCAAAGCCTGTATCCAAACCAGCAGCTTCCAAACCTGCTGCTACTGCTTCACCACCTACAGATTCTGGCAAGCAGATTCCAGCTGGTATTCATAGTAGCTCCTCAAACAACTATTTGAGGGCTGATGGTCAGAACACTGGCAATTTCATAACGGATCGGCCTTCAACCAAGGTCCACGCAGCTCCTGGCGGTGGATCTTCTCTGGATTATCTGTTTGGTGGTGCTGGTGGAAAATGA 390 52.56 MGRGVSSGGGQSSLGYLFGSGESPNAGAPKGGQAPAPAPAPAPAPAPRSNEAKPVSKPAASKPAATASPPTDSGKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGAGGK 129
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 436648 439777 - Cp4.1LG07g00840.1 Cpe07g00090 471897

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00090 129 MobiDBLite consensus disorder prediction 1 19 - -
Cpe07g00090 129 PANTHER PROTEIN SPIRAL1-LIKE 2 1 127 - -
Cpe07g00090 129 MobiDBLite consensus disorder prediction 1 129 - -
Cpe07g00090 129 PANTHER SPR1 1 127 IPR039613 GO:0043622
Cpe07g00090 129 MobiDBLite consensus disorder prediction 34 48 - -
Cpe07g00090 129 MobiDBLite consensus disorder prediction 66 104 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00090 K18635 SPR1; protein SPIRAL1 and related proteins - csv:101221309 142.124
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00708 Cpe-Chr1:4097133 Cpe07g00090 Cpe-Chr7:436648 6.78E-15 dispersed
Cpe01g02430 Cpe-Chr1:20175906 Cpe07g00090 Cpe-Chr7:436648 4.49E-26 dispersed
Cpe11g00392 Cpe-Chr11:2162313 Cpe07g00090 Cpe-Chr7:436648 5.55E-57 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g28 Blo01g00455 Blo16g01083 Bda01g02124 Bda11g01173 Bpe13g01371 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0523 Cone9ag0536 . . . . . . . Bda11g01173 . Bpe02g02313 Bma01g00125 . . . . . . . . . Cpe07g00090 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002868 2 2 1 1 2 2 3 1 1 1 1 2 2 1 2 2 2 2 3 1 1 2 1 1 2 2 1 2 3 5 54
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe07g00090 Cpe_Chr07 FPKM 7.558816 4.8523 7.052669 8.398442 8.626508 7.731621 9.150061 20.651178 19.68121 22.050995