Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00091 ATGGCGGAAGCTTCGGTAAAACCCACTCCCCTTTTGAAAGATGAACTCGATATCGTCATCCCTACCATCCGGAACCTCGATTTCTTGGAGATGTGGAGACCGTTCTTCGAGCAATACCATTTGATCATCGTTCAAGATGGTGATCCTTCGAAGACTATCAAGGTCCCTGAAGGATTCGACTATGAACTCTATAATCGGAACGATATCAATCGGATTCTTGGTCCGAAGGCCTCGTGCATTTCGTTTAAGGATTCTGCTTGTCGATGCTTTGGATATATGGTTTCCAAGAAGAAGTACATCTACACAATCGACGATGATTGCTTTGTTGCGAAGGACCCGTCGAACAAGGATATCAACGCGCTCGAGCAGCACATAAAGAACCTTCTATCACCAGCCACCCCAAATTTCTTCAACACTCTGTATGATCCATACAGAGAAGGTGCAGATTTTGTGCGTGGATACCCTTTCAGTCTTCGTGAGGGTGTCCCGACCGCAGTTTCTCATGGACTCTGGCTTAACATTCCTGACTACGATGCTCCAACGCAGCTCGTCAAGCCTCGTGAAAGGAACTCTAGGTATGTAGATGCAGTGTTGACAATTCCCAAGGGAACCTTGTTTCCCATGTGTGGAATGAATCTCGGATTCAACCGTGAACTGATCGGACCTGCTATGTATTTTGGACTCATGGGAGACGGTCAGCCGATAGGACGATACGACGACATGTGGGCTGGTTGGTGTGTGAAGGTGATTTGTGACCATATGGGGTGGGGAGTTAAGACAGGACTGCCTTACATATGGCACAGCAAAGCCAGCAACCCATTCACCAACCTGAGAAAGGAGTACAAAGGGATCTTCTGGCAAGAAGATCTGATCCCGTTCTTCCAATCGGTCGTCCTCCCGAAAGAATGCACGACGGTTCAGAAATGCTACATCGAACTGTCGAAGCTAGTGAAGGAGAAGCTCGGCCCCATCGATCCCTACTTCGTTAAGCTCTCCGAGGCAATGGTCACTTGGATTGAAGCTTGGGATGAGCTCAACCCTGCTGGAGACGCCTCCAAGTAG 1062 48.49 MAEASVKPTPLLKDELDIVIPTIRNLDFLEMWRPFFEQYHLIIVQDGDPSKTIKVPEGFDYELYNRNDINRILGPKASCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSNKDINALEQHIKNLLSPATPNFFNTLYDPYREGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVKPRERNSRYVDAVLTIPKGTLFPMCGMNLGFNRELIGPAMYFGLMGDGQPIGRYDDMWAGWCVKVICDHMGWGVKTGLPYIWHSKASNPFTNLRKEYKGIFWQEDLIPFFQSVVLPKECTTVQKCYIELSKLVKEKLGPIDPYFVKLSEAMVTWIEAWDELNPAGDASK 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 440421 443265 - Cp4.1LG07g00880.1 Cpe07g00091 471898

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00091 353 PIRSF UPTG 6 350 IPR004901 GO:0016866|GO:0071669
Cpe07g00091 353 SUPERFAMILY Nucleotide-diphospho-sugar transferases 38 248 IPR029044 -
Cpe07g00091 353 Pfam Reversibly glycosylated polypeptide 12 346 IPR037595 -
Cpe07g00091 353 PANTHER UDP-ARABINOPYRANOSE MUTASE 3 3 351 - -
Cpe07g00091 353 PANTHER UDP-ARABINOSE MUTASE 3 351 IPR037595 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00091 K13379 RGP, UTM; reversibly glycosylated polypeptide / UDP-arabinopyranose mutase [EC:2.4.1.- 5.4.99.30] - csv:101221070 724.161
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g01398 Cpe-Chr2:12219358 Cpe07g00091 Cpe-Chr7:440421 0 dispersed
Cpe07g00091 Cpe-Chr7:440421 Cpe09g01153 Cpe-Chr9:9821621 0 dispersed
Cpe11g00393 Cpe-Chr11:2165186 Cpe07g00091 Cpe-Chr7:440421 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g14 Blo01g00460 . . Bda11g01166 Bpe13g01365 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g01166 . Bpe02g02309 Bma01g00129 . . . . . . . . . Cpe07g00091 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000316 4 5 5 5 5 4 7 4 4 4 3 4 7 4 4 6 4 7 7 4 4 4 4 4 4 4 4 7 4 4 140
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe07g00091 Cpe_Chr07 FPKM 10.591123 12.177766 7.360272 7.233911 13.084434 11.172557 11.045379 10.012934 10.712103 11.788187