Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00093 ATGGGAAGAGGTAAGGTGGAGCTGAAGAAGATAGAGAACAAAATAAACCGACAGGTAACCTTCACAAAACGAAGAAATGGTCTTCTTAAAAAGGCTTATGAGCTCTCCATTTTGTGTGATGCTGAGGTGGCACTCATCGTCTTCTCCACCGCCAAGACGTTGGAGAGGTATCAAAGACATAGCTATGGAGCTTTGGCAGCCTCCCATCATCTCAAGGACACCGAGACGAATTCTTGGAGAAGAATTGGAAGATTTGGAGACGAACGAATTGGACCAACTCGAGATTCAATTGGAAACGTCTCTAAAGCAAATCAGAACCAAACCGTGTTTGATCAGTTATCTGAGCTAAAAAAGAAGGAAGAATTACTGCTGGAAACTAATCAAGCTTTGAGGAGGAAGTTGGAAGAAAGCAGTGCAGCTCTTCATTCATCATGGGAAGCTTCGGAACCCAACAATTTGCATTACTGTGGACAACCTGAGGCCTTTCTTCAAGGCAATAATATTGCATTGGAAAATAGTTACAATCCAGCAGAGGTTTCAAATCAAGAAAACGCCATAAACTCTGAGCCAGAAGGTAGGGTTCAACTGAAAAGAATTGAGAACAAAATAAACAGGCAGGTTACTTTCTCCAAAAGGAAAGCTGGTTTGCTGAAGAAGGCTCATGAAATCTCTGTTCTCTGTGATGCTGAAGTTGCTTTGATTGTTTTCTCCCACAAAGGAAAGCTCTTTGAATACTCCTCTGATTCCAGTATGGAGAAAATACTCGAACGATATGAACGATATTCGTATGTGGGCAGGCAACAAATTGCAGCTACTGAATCTGAATTTTCACAGGAAAATTGGACTCTCGAGTACTATAGACTCAAATCACGAGTCGAACTCTTACAAAGAAACAACAGTCATTACATGGGAGAAGATTTGGATTCATTAAGCGTCAAAGAACTGCAAAACTTGGAGCAACAAATCGACACTGCACTCAAACATGTTCGTTCGAGGAAAGAACGAGCAATTCAGGAACAAAACGCTCTCCTAGCAAAGCAGATCAAGGAGAAGGAGAAGAGCGTAGCAATGGCTCAGCAGGCCGAGTGGGAGCAGCAGCAGCAACATGGTTACAATGCACTGTCTTTCTTATTCCCATCAGCTCCTCACCCGTCTCTAAACATCGGGCTTGCGAGTTTTGATGGTCACCTGTGA 1194 42.88 MGRGKVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAEVALIVFSTAKTLERYQRHSYGALAASHHLKDTETNSWRRIGRFGDERIGPTRDSIGNVSKANQNQTVFDQLSELKKKEELLLETNQALRRKLEESSAALHSSWEASEPNNLHYCGQPEAFLQGNNIALENSYNPAEVSNQENAINSEPEGRVQLKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYSSDSSMEKILERYERYSYVGRQQIAATESEFSQENWTLEYYRLKSRVELLQRNNSHYMGEDLDSLSVKELQNLEQQIDTALKHVRSRKERAIQEQNALLAKQIKEKEKSVAMAQQAEWEQQQQHGYNALSFLFPSAPHPSLNIGLASFDGHL 397
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 459230 470274 + Cp4.1LG07g00830.1 Cpe07g00093 471900
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00093 397 ProSiteProfiles K-box domain profile. 278 369 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cpe07g00093 397 CDD MADS_MEF2_like 192 267 IPR033896 GO:0000977|GO:0045944
Cpe07g00093 397 Coils Coil 315 335 - -
Cpe07g00093 397 PANTHER TRUNCATED TRANSCRIPTION FACTOR CAULIFLOWER A 191 375 - -
Cpe07g00093 397 PANTHER TRUNCATED TRANSCRIPTION FACTOR CAULIFLOWER A 1 79 - -
Cpe07g00093 397 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cpe07g00093 397 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 198 245 IPR002100 GO:0003677|GO:0046983
Cpe07g00093 397 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 54 IPR002100 GO:0003677|GO:0046983
Cpe07g00093 397 Pfam K-box region 273 353 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cpe07g00093 397 PANTHER SERUM RESPONSE FACTOR HOMOLOG 191 375 - -
Cpe07g00093 397 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 79 - -
Cpe07g00093 397 ProSiteProfiles MADS-box domain profile. 189 249 IPR002100 GO:0003677|GO:0046983
Cpe07g00093 397 Coils Coil 113 136 - -
Cpe07g00093 397 Gene3D - 201 274 IPR036879 GO:0003677|GO:0046983
Cpe07g00093 397 Gene3D - 13 79 IPR036879 GO:0003677|GO:0046983
Cpe07g00093 397 PRINTS MADS domain signature 191 211 IPR002100 GO:0003677|GO:0046983
Cpe07g00093 397 PRINTS MADS domain signature 226 247 IPR002100 GO:0003677|GO:0046983
Cpe07g00093 397 PRINTS MADS domain signature 211 226 IPR002100 GO:0003677|GO:0046983
Cpe07g00093 397 SUPERFAMILY SRF-like 192 271 IPR036879 GO:0003677|GO:0046983
Cpe07g00093 397 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cpe07g00093 397 SMART madsneu2 189 248 IPR002100 GO:0003677|GO:0046983
Cpe07g00093 397 CDD MADS_MEF2_like 2 65 IPR033896 GO:0000977|GO:0045944
Cpe07g00093 397 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Cpe07g00093 397 SUPERFAMILY SRF-like 2 64 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00093 Cpe-Chr7:459230 Cpe09g01156 Cpe-Chr9:9836724 3.20E-25 dispersed
Cpe11g00399 Cpe-Chr11:2202574 Cpe07g00093 Cpe-Chr7:459230 3.79E-74 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49705 PF01486 K-box 3.70E-20 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00093 K09264 K09260 sind:105156749 370.163