Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00094 ATGGCTAAGTTATCAAACCTTAGCTCGAGCAACAATGATAAGAAGGACAAGAAGAGCAAGAAGAAGAAGAAGAGTGCTGGTCCGAAAGCGTTGTCGATGAAGGTCAGTGCTCCGAAGGCGAATCCATTCGAGAGCATTTGGTCTCGTAGGAAATTTGACGTCCTTGGGAAGAAACGTAAGGGAGAAGAGCGTCGTATTGGCCTTGCTCGCTCGCTTGCGATTGAAAAGAGGAAAAAGACGCTGTTAAGGGAGTACGAGCAAAGTGGTAAGTCTACAGAATTTTCCGATAAGCGAATTGGGGAACAGGACGAAGAGCTTGGGGAGTTCGACAAGGCTATTTTACGTTCGCAGCGCGAACGGAAGCTAAAATTGAACAAGAGCAGCAAATTTAACTTATCTGATGGAGAAGATGACGATTATTTTGGAAGCAATAGTCTTGGCGCGTTACCTGCAAATGACGATTTTGAGGATGAAGTAATACCTGACGACGATGACGATGCAGAAGCTGCTGAAACTAAGAAAGGGGCTTATCATGGTGCACCGTATCAACAAAAAAGTGGTTTATTAGAGGGAGAGGAAAACAAACGCAAAAGCAAGAAGGAAGTGATGGATGAGATTATCGCAAAGAGCAAATTTTTCAAGGCACAAAAAGCAAGGGATAAGGAAGAAAATGAACAACTTATTGAAGACCTGGACAAGAAGTTTGAGTCGTTGGTCCAGTCTGAGGCATTATTATCTCTCACTAGTTCTGGTAACGCAAATGCCTTGAAAGCTCTTGTTCAAAAGAGTATTCCAAATGAGCATTTGAAGAAGGATAATTTGCTCTCTGCTGGGAAGACTGAAAATTTTAATCAGGAAAAACCTGATGCTTTTGACAAGCTTGTCAAAGAGATGGCAATGGAAATACGTGCACGCCCCTCTGACAGGACGAAGACCCCTGAAGAAATTGCCCAGGAGGAACGGGAACGGCTTGAACAATTAGAGGGTTGGGTTGATGAGATTTTTGAAAGAAAGGATGCTGATGGCACTGAAAGTGAAGATGATGATTCTGCAGAAGATACAGACAGTAGTGATGATGTGGGTGGGGATTCTGATGATGAATCCGAGGAAGATGATAACACTCGTGGAAGGAAGCATTCTTTGAAGGATTGGGAACAGAGTGATGATGACATTCTTGACTCTAACTCAGAAGAGGACGATGAAGCAAGTAAAGAAGACAAAGAACTGGATGAGAACCATCCTAAAAAGGCAAACAAGGGTGCCATAATTAAAAGTAGTAAAAGTGAAGGAAGCTCTGAAGATGCTAAGAAATTAGAAAAGAATACGAAGCGTGAAAATAAACCAGAACTTCCTTATATAATTGAAGCACCAGAGAGCTTTGACCAATTTTTGTCATTATTGGCTGATTGTTCAGATAGCGATGTACTCTTGATCATTGATCGAATTCGGGCAAGTAATGCTATCCAGTTAACAGAAAAAAATCTGGAAAAAATGCAGAGATTCTATGGCATACTTCTGCAATATTTTGCTGTGTCAGCAAATAAGAAGCCATTAAACGTGGAGCTACTAAATTTGCTTCTCAAGCCGTTGATGGAGATGAGTAGGCAGATTCCTTTCTATGCTGCTACATGTGCTAGGACGAGGATATCCCACACTCATCAACAGTTTTGTGTTGATAATAAGAATCCAGAGAATAGCTCATGGCCTTCTTCCAAAACTTTGATTCTCTTGAGGCTATGGTCAATGATATTTCCTTGCTCTGACTACCACCATGTGGTCATCACACCAGCAATATTGTTGATGTGCGAATATTTGATGCGTTGCCCCATTGTGACCGGTCGGGATATTGCAATTGGCTCTTTCTTGTGTTCTCTGCTGCTCTATGTAGCCAAACAATCTTTGAAGTTCTGTCCTGAAGCAATAAACTTTCTCCAAACTTTGTTGATCGCAGCTGCTGGTAGAAGGTCATTACCCTCGCAAAATCCTCAGATTTGTAATCTAGTGGATTTACAAGCACTTGGGCAGTTGCTGCGTATACAGAATCCTACAAACGAGATTACCCCCCTGGACTTCTTCTTTATGATGAATTTGACTGAACATTCTTCCATTTTTAGCTCCGACAGCTACAGGGCCGGGGTGCTGTTGACAGTTATTGAAACTCTTGATGGATTTGTTAACGTATATGGTCAATTGAAATCCTTCCCAGAAATCTTCATGCCATTCTCGACAATTTTACACGAATTGGCACTGCAGGAGAACATGCCGGATGTATTACGTGATAAATTCAGCAAAGTTGCTGAAGCAATTGAAGCCAAAACGGAGGAGTATTACATGGGGCGGCAACCTCTTAGAATGAGGAAGCAGAAGGCTGTGCCAATCAAATTACTGAATCCAAAATTTGAGGAGAACTTCGTTAAGGGCAGAGACTACGATCCAGATCGTGAACGAGTTGAAAAAAGAAAGCTGCAGAAACTTTTAAAACGTGAAGCTAAAGGAGCAGCCCGTGAACTACGCAAGGATAACCATTTCTTGTTCGATGTGAAGGCAAGAGACAAGGCACTGCAGGAAGAAGAAAGAGCAGAACGATACAAAAAGGCGAGCGCCTTCCTTCAACAACAAGAGCACGCTTTCAAATCGGGGCAGTTGGGAAAGGGAAGGAAGAGAAGAAAATGA 2673 42.27 MAKLSNLSSSNNDKKDKKSKKKKKSAGPKALSMKVSAPKANPFESIWSRRKFDVLGKKRKGEERRIGLARSLAIEKRKKTLLREYEQSGKSTEFSDKRIGEQDEELGEFDKAILRSQRERKLKLNKSSKFNLSDGEDDDYFGSNSLGALPANDDFEDEVIPDDDDDAEAAETKKGAYHGAPYQQKSGLLEGEENKRKSKKEVMDEIIAKSKFFKAQKARDKEENEQLIEDLDKKFESLVQSEALLSLTSSGNANALKALVQKSIPNEHLKKDNLLSAGKTENFNQEKPDAFDKLVKEMAMEIRARPSDRTKTPEEIAQEERERLEQLEGWVDEIFERKDADGTESEDDDSAEDTDSSDDVGGDSDDESEEDDNTRGRKHSLKDWEQSDDDILDSNSEEDDEASKEDKELDENHPKKANKGAIIKSSKSEGSSEDAKKLEKNTKRENKPELPYIIEAPESFDQFLSLLADCSDSDVLLIIDRIRASNAIQLTEKNLEKMQRFYGILLQYFAVSANKKPLNVELLNLLLKPLMEMSRQIPFYAATCARTRISHTHQQFCVDNKNPENSSWPSSKTLILLRLWSMIFPCSDYHHVVITPAILLMCEYLMRCPIVTGRDIAIGSFLCSLLLYVAKQSLKFCPEAINFLQTLLIAAAGRRSLPSQNPQICNLVDLQALGQLLRIQNPTNEITPLDFFFMMNLTEHSSIFSSDSYRAGVLLTVIETLDGFVNVYGQLKSFPEIFMPFSTILHELALQENMPDVLRDKFSKVAEAIEAKTEEYYMGRQPLRMRKQKAVPIKLLNPKFEENFVKGRDYDPDRERVEKRKLQKLLKREAKGAARELRKDNHFLFDVKARDKALQEEERAERYKKASAFLQQQEHAFKSGQLGKGRKRRK 890
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 471999 479147 + Cp4.1LG07g00820.1 Cpe07g00094 471901

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00094 890 MobiDBLite consensus disorder prediction 302 449 - -
Cpe07g00094 890 Pfam Nop14-like family 39 875 IPR007276 GO:0032040
Cpe07g00094 890 MobiDBLite consensus disorder prediction 429 449 - -
Cpe07g00094 890 MobiDBLite consensus disorder prediction 302 341 - -
Cpe07g00094 890 PANTHER NOP14 15 890 IPR007276 GO:0032040
Cpe07g00094 890 MobiDBLite consensus disorder prediction 1 37 - -
Cpe07g00094 890 MobiDBLite consensus disorder prediction 342 370 - -
Cpe07g00094 890 MobiDBLite consensus disorder prediction 870 890 - -
Cpe07g00094 890 MobiDBLite consensus disorder prediction 125 199 - -
Cpe07g00094 890 Coils Coil 214 241 - -
Cpe07g00094 890 MobiDBLite consensus disorder prediction 390 405 - -
Cpe07g00094 890 MobiDBLite consensus disorder prediction 371 389 - -
Cpe07g00094 890 Coils Coil 189 209 - -
Cpe07g00094 890 Coils Coil 853 873 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00094 K14766 NOP14, UTP2; nucleolar protein 14 - csv:101219176 1233.39
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00094 Cpe-Chr7:471999 Cpe07g00404 Cpe-Chr7:2633632 2.67E-10 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g5 Blo01g00462 . Bda01g02118 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0893 . . . . . . . . . . . . Bpe02g02306 Bma01g00132 . . . . . . . . . Cpe07g00094 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008534 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 2 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe07g00094 Cpe_Chr07 FPKM 15.435328 17.693941 1.224194 1.421539 25.604095 26.502045 26.442511 3.134136 3.978678 3.54527