Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00095 ATGGGAGTGGGGAAGAAGTGTTGTGTGTTTTCTTGTACTTTTTTCAAGTTGCAGGTTTTGGAGTATCGTGTCGGGAGGGTTGTTATTGACAATGAAGCCTGTAAGGATGCTACTGTTATAAGGGTAGATAGCGCCAATAAACATGGGATTCTTCTTGAAGTCGTTCAAGTTCTTACTGATCTTAATCTCATCGTCACCAAAGCCTATATTTCTTGTGATGGTTGTTGGTTCATGGATGTTTTTAATGTCACTGATCAAGATGGAAACAAAGTTACAGATGAAGGGGTTTTAGACTATATCAAAAGGTCGCTTGAGTCGGATTCTTGTTTTGCATCTTCCATGAGATCTGTGGGTGTAAAACCATCGGTTGATTACACAGCAATTGAGCTTATTGGAAATGATAGACAAGGATTACTTTCTGAACTCAGCGCTGTCCTCACTCACCTCAAATGCAACGTTGTGCACGCCGAGGTGTGGACTCACAACACACGGGCGGCCGCCGTGATGCATGTCACCGACGACGAAACTGGTTCTGCAATTACTGATCTTGAGAGGCTATCTAGGATCAAGGGATTACTCTGTAATGTACTAAGGGGAAGCAACAATAGGACCAATGGAGCTAAGACGGTCGTGTCTCAAGGAGTCACTCACATTGACAGAAGGCTTCATCAGATGATGTGTGCTGATAGGGATTATGAACTTCTTGGTGAAGATTTAATGGACGAGAAGCAAAGGCCTAATGTCAAGGTTGTTAATTGGTGTGACATAGACTATTCTGTCATTACAATTCGGAGCAAAGATCGCCCGAAACTTCTTTTCGACACAATTTGCACGTTGACAGATATGCAATATGTGGTCTTCCATGCCAATGTAGTTGCTGAAGGGACAGAAGCCTATCAGGAATATTACATTAGACATATAGATGGATCTCCTGTTAAATCTGATGCAGAGAAACAAAGGGTAATTCAATGTCTTGAAGCTGCTATAAGGAGAAGAGTGTCTGAGGGCTTGAAGCTTGAGTTATGCACAACAGATAGAGTAGGCCTTCTCTCAGATGTCACCCGCATCTTCCGAGAGAACAGCCTGACTGTCACAAGAGCAGAGGTATCAACTAAAGGCGGTAAGGCGATTAATACGTTCTACGTTCGTGATGCGTCGGGGTATCCAGTCGATTCGAAGACGATAGATTCAATTCGAGATTTGATCGGGCAAACAATACTGAAAGTGAAAGGCAGTCCTAAAGAACAAAAACAAGGTTCTTCTCAGGATTCACCAACTAGATTCTTATTTGGTGGTCTTTTTAGATCTAGATCTTTTGTAAATTTTGGGTTAATAAGGTCATAA 1344 42.19 MGVGKKCCVFSCTFFKLQVLEYRVGRVVIDNEACKDATVIRVDSANKHGILLEVVQVLTDLNLIVTKAYISCDGCWFMDVFNVTDQDGNKVTDEGVLDYIKRSLESDSCFASSMRSVGVKPSVDYTAIELIGNDRQGLLSELSAVLTHLKCNVVHAEVWTHNTRAAAVMHVTDDETGSAITDLERLSRIKGLLCNVLRGSNNRTNGAKTVVSQGVTHIDRRLHQMMCADRDYELLGEDLMDEKQRPNVKVVNWCDIDYSVITIRSKDRPKLLFDTICTLTDMQYVVFHANVVAEGTEAYQEYYIRHIDGSPVKSDAEKQRVIQCLEAAIRRRVSEGLKLELCTTDRVGLLSDVTRIFRENSLTVTRAEVSTKGGKAINTFYVRDASGYPVDSKTIDSIRDLIGQTILKVKGSPKEQKQGSSQDSPTRFLFGGLFRSRSFVNFGLIRS 447
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 481898 484626 - Cp4.1LG07g00910.1 Cpe07g00095 471902

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00095 447 CDD ACT_ACR_3 258 332 - -
Cpe07g00095 447 ProSiteProfiles ACT domain profile. 338 414 IPR002912 -
Cpe07g00095 447 Pfam ACT domain 38 89 IPR002912 -
Cpe07g00095 447 Pfam ACT domain 344 399 IPR002912 -
Cpe07g00095 447 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR4-RELATED 25 446 IPR040217 -
Cpe07g00095 447 CDD ACT_ACR_2 126 199 - -
Cpe07g00095 447 ProSiteProfiles ACT domain profile. 127 207 IPR002912 -
Cpe07g00095 447 PANTHER BNAC06G29950D PROTEIN 25 446 - -
Cpe07g00095 447 SUPERFAMILY ACT-like 34 103 IPR045865 -
Cpe07g00095 447 Pfam ACT domain 128 191 - -
Cpe07g00095 447 Gene3D - 125 198 - -
Cpe07g00095 447 SUPERFAMILY ACT-like 124 184 IPR045865 -
Cpe07g00095 447 CDD ACT_ACR_4 336 407 - -
Cpe07g00095 447 SUPERFAMILY ACT-like 334 403 IPR045865 -
Cpe07g00095 447 ProSiteProfiles ACT domain profile. 39 119 IPR002912 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00095 - - - csv:101218703 783.482
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g01517 Cpe07g00095 CCT
Cpe07g00095 Cpe09g00233 CCT
Cpe07g00095 Cpe09g00233 ECH
Cpe01g01517 Cpe07g00095 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00982 Cpe-Chr1:5827855 Cpe07g00095 Cpe-Chr7:481898 1.89E-170 dispersed
Cpe07g00095 Cpe-Chr7:481898 Cpe09g00233 Cpe-Chr9:1345306 0 dispersed
Cpe07g00095 Cpe-Chr7:481898 Cpe13g01131 Cpe-Chr13:9014946 9.97E-175 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g2 Blo01g00462 . . . . Bpe10g00911 Bma14g01718 . Cmo04g01798 Cmo18g01113 . Cma18g01089 . Car18g01010 . Cpe09g00233 Cpe01g01517 . . . . . . . . . . . . . . Cone13ag0891 Cone19ag0890 Cone6ag0514 Cone9ag0526 . Csa05g02523 . . Blo06g00939 Blo11g00801 . . . . . . . . . Cma04g01711 . Car04g01745 . . Cpe07g00095 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002935 2 4 1 3 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 2 2 2 1 1 2 3 4 1 53
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe07g00095 Cpe_Chr07 FPKM 30.714752 30.349377 29.063599 35.85033 35.945885 35.792091 37.446053 34.126015 31.301996 33.567078