Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00096 ATGTTCTATGCTACGGGATTTCACAAGGCCGCTCTCATGGCTGCCAAACCAAAACCCCAGCTACTTCATAAAATTGCAGGGACAGCGGTGGAGAGCTCACCGAAAAGAGCGAGGACATTATCCACTCAGTCCTCCATGAAAGACGCCTTCGCTAAATATGCTGAGTACCTTAATAACCTCAATGATAAACGGGAAAGAGTGGTGAAAGCAAGCCGTGATATTACAATGAACAGCAAAAAGGTCATTTTTCAAGTACACAGAATCAGTAAACAAAACAAAGAAGAAGTTCTGGAAAAGGCAGAAAAGGACTTGGCAGATGTGACAACTCGGCATGTGTCCCGACTTGTAAATGAACTACAGGGAACCGATTTCTGGAAGCTAAGGCGAGCATACTCACCAGGGGTGCAAGAATATGTTGAAGCTGCAACGTTATGTAAATTTTGCAAAACAGGAACTCTTTTGAGTCTTGATGAGATAAATGCTGTATTGCTACCCCTCAGTGATCCATCACTTGAGCCTTTACAAATTAACAATCTCGACTACATCTTGGGGCTTGCAGATTTGACTGGAGAACTGATGCGGTTAGCAATTGGTCGAATATCAGATGGAGAACTTGAGTTTGCTAAGAAGATATGCAGATTTGTTCGTGACATTTACCGTGAGCTCACTCTACTAGTCCCGCATATGGACGATAATTCTGATATGAAAATGAAGATGGACACCATGCTTCAAAGTACGATGAAGATAGAAAATGGTATTTCTCTAAACGTTCATCTGTTTGATATTCTGAGCATGAACTACTTCATTTGTGCATTGAAAGTCAGAAACACGTTGAACGAGAATGTTTCTAACTAA 855 41.4 MFYATGFHKAALMAAKPKPQLLHKIAGTAVESSPKRARTLSTQSSMKDAFAKYAEYLNNLNDKRERVVKASRDITMNSKKVIFQVHRISKQNKEEVLEKAEKDLADVTTRHVSRLVNELQGTDFWKLRRAYSPGVQEYVEAATLCKFCKTGTLLSLDEINAVLLPLSDPSLEPLQINNLDYILGLADLTGELMRLAIGRISDGELEFAKKICRFVRDIYRELTLLVPHMDDNSDMKMKMDTMLQSTMKIENGISLNVHLFDILSMNYFICALKVRNTLNENVSN 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 490815 495645 - Cp4.1LG07g01030.1 Cpe07g00096 471903

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00096 284 Gene3D Translin; domain 1 40 167 IPR016068 GO:0043565
Cpe07g00096 284 Coils Coil 46 73 - -
Cpe07g00096 284 PANTHER TRANSLIN-ASSOCIATED PROTEIN X 25 258 - -
Cpe07g00096 284 Coils Coil 90 110 - -
Cpe07g00096 284 SUPERFAMILY Translin 45 251 IPR036081 GO:0043565
Cpe07g00096 284 Pfam Translin family 62 251 IPR002848 GO:0043565
Cpe07g00096 284 Gene3D Translin; domain 2 181 259 IPR016069 GO:0043565
Cpe07g00096 284 CDD TRAX 50 251 - -
Cpe07g00096 284 PANTHER TRANSLIN AND TRANSLIN ASSOCIATED PROTEIN X 25 258 IPR002848 GO:0043565
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00096 - - - bhj:120075864 465.692
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g995 Blo01g00463 . Bda01g02117 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe02g02305 Bma01g00133 . . . . . . . . . Cpe07g00096 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008533 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 4 2 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe07g00096 Cpe_Chr07 FPKM 10.307521 11.327474 13.108891 12.566726 16.619822 17.086376 18.073839 13.808316 12.123996 13.368819