Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00098 ATGAATTATTGCCGCTTACGAATTGCCGGAGTTGCAGTAATTCCCGAATCGGAGAAGAACAGAGGACGCATTTTCGATTGTTCTGGTGCGGTGATCGGCGACGTAGCATACGGCGGAGCTTCGGCGAAGGAGGAGGAGGAGGAGGAGGAGCAGGAAGCCCTTTTTGAAGCTGTTAACAGAAATTACCAGTTCCGTTCGGGGTTTCTGTCTCAATTTTATCGACTCTTCCCCATCTGTGTTTCAGAAAGTGACCCTCCATTTTACTCTTCAATGACCAGCTCAGATTGTGTTCCAGAATCTATTGAATGCAATTACAATACTGAGTTGCAACACCAGATCGTTAGTATCGATCCAATTGGTCTCTTGTGTCAAGAAAAGATAAACCACGAGGATGCCATTCAATCTCCATCTTCAACTGGTGGTGGGAATAGTTGCCTGACCACTAAAATTAACCACTCGTCGGTAGATTGTTTTGATGATAATGCTGAAGGTATTAATGCATTTATGTCATCATCTGGTAAGAAATCCTCAGACTCGTATGTGGACAAAAGTGTCATGGAATGTCAAATGTCGAAAATGATAGTATGTGACAAGGAAATTAATGTCAATGATGTGAAGGACATCTGTATTGATGAAGGGGTGCCTTCTTTGGTCAACTTCATCTTTAGGAGTACGGATGAGAAGTCAAGCTACAAAACCCTGCCTTTGAACCAAAATGAAGGTTCTATAAAAGAACAAAAGAATTCTTCTGAGGTGTTGGAGTCCATTGCAGATAATAAAAAAATCTCTTTAGAAGATCACTTTGCCACGGACTGGAGTACTCATAATGATGCCAAGGATCTGAATCAGATAGAGGAAGCAAAACTCAATCAAAGTGAACCACAAGTTCCGGTGCAAAAGCTAATATCTAGTGAAAAAGGCAACTCGGAAGACCCTGCTTCAGCTTTCAAACCCGTTGAATCTTGCAATGACAATTCTGCTCTGGGAACTGAGGCAGAATCACCAAATGAAAACATTCCAACACAACACCCTTCAGCTCATAATAATGAATTTGAGAAGGGAAGTACTACATTGAATCTCAATTCAATCTCTCCCATGGCCAATGCTGAAGAAGAACTCCATGGAAATATCAACTCAGACTACCCAGGACCCAAGACCAGTAGCGCTGGGACACAGGAGTGTTATGGAAGTAACGATTCTGCATTCGGAACCCAAGTTTCGACAAGTCGATTAATTTCAAGCCAGACTGCACACGACAGTGGCGAGTCTAGTTTCTCTGCTCTAGATCCATTAGCTAGCCTTGTTACTTACTCGGGGCCAATAGCTTATTCTGGAAGCATCTCTCTTCGATCGGAAAGTAGCACGACAAGCACCCGCTCTTTTGCCTTCCCTATATTACAGTCTGAATGGAATAGCAGCCCGGTTAAAATGGTAAAAGCTGAAAGGAGGCATTACCGGAAGTACAGAGGATGGAGGGAGGGGCTTCTATGCTGCAGATTCTGA 1503 43.25 MNYCRLRIAGVAVIPESEKNRGRIFDCSGAVIGDVAYGGASAKEEEEEEEQEALFEAVNRNYQFRSGFLSQFYRLFPICVSESDPPFYSSMTSSDCVPESIECNYNTELQHQIVSIDPIGLLCQEKINHEDAIQSPSSTGGGNSCLTTKINHSSVDCFDDNAEGINAFMSSSGKKSSDSYVDKSVMECQMSKMIVCDKEINVNDVKDICIDEGVPSLVNFIFRSTDEKSSYKTLPLNQNEGSIKEQKNSSEVLESIADNKKISLEDHFATDWSTHNDAKDLNQIEEAKLNQSEPQVPVQKLISSEKGNSEDPASAFKPVESCNDNSALGTEAESPNENIPTQHPSAHNNEFEKGSTTLNLNSISPMANAEEELHGNINSDYPGPKTSSAGTQECYGSNDSAFGTQVSTSRLISSQTAHDSGESSFSALDPLASLVTYSGPIAYSGSISLRSESSTTSTRSFAFPILQSEWNSSPVKMVKAERRHYRKYRGWREGLLCCRF 500
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 501865 506338 + Cp4.1LG07g01010.1 Cpe07g00098 471905

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00098 500 PANTHER 18S PRE-RIBOSOMAL ASSEMBLY PROTEIN GAR2-LIKE PROTEIN 145 500 - -
Cpe07g00098 500 Coils Coil 41 61 - -
Cpe07g00098 500 MobiDBLite consensus disorder prediction 380 396 - -
Cpe07g00098 500 MobiDBLite consensus disorder prediction 374 396 - -
Cpe07g00098 500 PANTHER 18S PRE-RIBOSOMAL ASSEMBLY PROTEIN GAR2-LIKE PROTEIN 145 500 IPR040378 GO:0009786
Cpe07g00098 500 MobiDBLite consensus disorder prediction 319 360 - -
Cpe07g00098 500 MobiDBLite consensus disorder prediction 287 360 - -
Cpe07g00098 500 MobiDBLite consensus disorder prediction 287 310 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00098 - - - mcha:111005214 513.072
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe07g00098 Cpe09g00236 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00098 Cpe-Chr7:501865 Cpe09g00236 Cpe-Chr9:1363916 2.17E-23 dispersed
Cpe11g00402 Cpe-Chr11:2220636 Cpe07g00098 Cpe-Chr7:501865 4.40E-165 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g993 . . . . . Bpe10g00909 . . . Cmo18g01111 . Cma18g01086 . Car18g01007 . Cpe09g00236 . . . . . . . . Cla05g02379 Cam05g2550 Cec05g2582 Cco05g2622 Clacu05g2550 Cmu05g2409 Cre05g2526 . . . . Lsi04g00348 . . . . Blo11g00799 Bda07g01494 . Bpe11g01661 . . . . . . . . . . . Cpe07g00098 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000606 4 19 2 1 2 2 5 2 2 2 2 2 4 2 2 4 2 2 5 2 2 2 2 2 2 2 2 16 5 1 104
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe07g00098 Cpe_Chr07 FPKM 2.756646 0.0 13.978447 13.405298 33.193806 36.310131 33.318729 3.744117 4.937272 4.845523