Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00099 ATGAGAACGGCGAAAAGCGTTCAGGAAGACGAAGAGTACGAGGAGGACGAGCTGGTTGCTAAAAGAGAGGGGCCTGCTTCTACTTACAACGCAAACAGTAGCATCGGAAACAGCAAAGATGGGAAGCACAATGATAAGGCTAATGCCATAAGGTCGAAGCACTCAGTCACGGAACAGCGCAGAAGAAGCAAGATTAATGAGAGATTCCAGATTTTGAGAGATCTTATACCTCACAGCGACCAAAAGAGAGATACCGTGTCGTTCTTATTGGAGGTGATTGAGTATGTACAGTATTTACAGGAAAAGGTGCAGAAATACGAGGGTTCATATCAGAATTGGAGTGGGGAACCTACTAAGTTGATACCATGGAGAAATAGTCATTGGCGTATGCCGACTTTTGTTGGCCATCCCGAGTCTGTAAAAAATGGTTCTGCTTCAGGACCAATGTATTCAGGGAAGTTTGATGACAACAACATTTCAATTTCACCAGCCATGCTTGCGAGCTCACAGAATCCTCTCGAGTCCCACACAGGCAGAGATATTCTACAGGATGCTGACATCACAAATAAAGTTCCACTTCCCATGTCTCTGGAAGGAAATACTCATGCTTCTATCCGTAGTGATGGTGTTCATGATCAATCTCTCCACGTTCCAATTTCTGATGCACAGACAACAGAGTGTCCCATCACCAACAATGCATCAAGCCAACCGGAGGAGATGAGCATTCAAGGAGGGACAATAAGCGTTTCGAGTCTTTATTCAGAAGGGTTATTGAACAGCTTGACTCAAGCTCTGCAGAATACTGGACTGGATTTGTCACAGGCTAGTATCTCCGTTCAGATTGATCTGGGCAAGCGAGCGAATAAGAGAACGCCATGCGGAACCCCTATTTATAAGGAAACTGGGAATCCTCCCTCCGGCCACCCATCAATGGCACATGAAGGGGACCTGGACAGTGAAGACGACTCAGATCAAGTCAAAAAGCGGCGTAGGACATGA 999 45.95 MRTAKSVQEDEEYEEDELVAKREGPASTYNANSSIGNSKDGKHNDKANAIRSKHSVTEQRRRSKINERFQILRDLIPHSDQKRDTVSFLLEVIEYVQYLQEKVQKYEGSYQNWSGEPTKLIPWRNSHWRMPTFVGHPESVKNGSASGPMYSGKFDDNNISISPAMLASSQNPLESHTGRDILQDADITNKVPLPMSLEGNTHASIRSDGVHDQSLHVPISDAQTTECPITNNASSQPEEMSIQGGTISVSSLYSEGLLNSLTQALQNTGLDLSQASISVQIDLGKRANKRTPCGTPIYKETGNPPSGHPSMAHEGDLDSEDDSDQVKKRRRT 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 507789 519716 - Cp4.1LG07g01070.1 Cpe07g00099 471906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00099 332 MobiDBLite consensus disorder prediction 39 62 - -
Cpe07g00099 332 CDD bHLH_AtBIM_like 48 124 - -
Cpe07g00099 332 MobiDBLite consensus disorder prediction 1 62 - -
Cpe07g00099 332 PANTHER TRANSCRIPTION FACTOR BIM2 1 332 - -
Cpe07g00099 332 Pfam Helix-loop-helix DNA-binding domain 51 100 IPR011598 GO:0046983
Cpe07g00099 332 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 49 99 IPR011598 GO:0046983
Cpe07g00099 332 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 1 332 IPR044295 GO:0003700|GO:0006351|GO:0046983
Cpe07g00099 332 MobiDBLite consensus disorder prediction 313 332 - -
Cpe07g00099 332 Gene3D - 47 119 IPR036638 GO:0046983
Cpe07g00099 332 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 47 119 IPR036638 GO:0046983
Cpe07g00099 332 MobiDBLite consensus disorder prediction 288 332 - -
Cpe07g00099 332 SMART finulus 55 105 IPR011598 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g01392 Cpe-Chr2:12184151 Cpe07g00099 Cpe-Chr7:507789 3.82E-62 dispersed
Cpe07g00099 Cpe-Chr7:507789 Cpe18g00723 Cpe-Chr18:7098155 3.76E-68 dispersed
Cpe11g00403 Cpe-Chr11:2225316 Cpe07g00099 Cpe-Chr7:507789 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49706 PF00010 HLH 3.20E-13 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00099 - - mcha:111004954 561.992