Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00106 ATGGCTACTGAGGGCAGTCCCAGGACTGATATCTCAACAGATGGGGACACAGACGAAAAAAGTCGGAGGTCGAACGATCGGGCCCTAACACTTGTTATGGCTTCGGATTCTAGTGACAGATCAAAGGATAAAACTGATCAGAAGACTCTTCGTCGGTTAGCTCAAAATCGTGAGGCTGCTAGGAAAAGTCGATTGAGGAAGAAAGCTTATGTTCAACAACTAGAGAGCAGTCGTTTAAAGCTGACACAACTCGAGCAGGAGCTTCAACGAGCACGACAGCAGGGAATTTTCATATCAAGCTCAGGTGACCAGACCCATTCAATGAGTGGCAATGGAGCCATGGCATTCGACGTAGAATATGCTCGATGGCTTGAAGATCACAACCGTCAAATGAACGAATTGAGATCCGCTGTTAATTCTCATGCAAGTGACCCGGAACTGCGTATTGTAGTCGATGGCATCTTGGTTCATTACGATGAGCTTTTCAGGCTCAAGGGAAATGCAGCGAAGGCTGACGTTTTCCATTTGTTATCAGGCATGTGGAAAACACCTGCCGAAAGATGTTTTCTTTGGCTCGGGGGTTTTCGTTCCTCCGAGCTCCTAAAGCTTCTTGTAAATCAACTGGAGCCTCTAACAGAGCAGCAGTTGGTGGGAATCACAAACTTGCAGCAGTCATCACAGCAAGCAGAAGATGCTTTATCACAAGGGATGGAGGCCTTGCAACAGTCCCTGGCCGAGACGTTGTCGAGTGGATCTCTCGGCTCCTCCAGTTCGTCGGGGAACGTTGCAAACTACATGGGTCAGATGGCTATGGCGATGGGTAAACTCGGGACGCTCGAGGGTTTTATACGCCAAGCCGACAATCTGCGACAACAGACACTTCAACAAATGCACCGAATATTGACAACTCGTCAGTCTGCTCGTGCGCTTCTCGCCGTACATGACTACTTCTCCAGGCTACGAGCTCTTAGTTCACTGTGGCTTGCTCGGCCCCGAGAGTAA 1002 49.1 MATEGSPRTDISTDGDTDEKSRRSNDRALTLVMASDSSDRSKDKTDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQTHSMSGNGAMAFDVEYARWLEDHNRQMNELRSAVNSHASDPELRIVVDGILVHYDELFRLKGNAAKADVFHLLSGMWKTPAERCFLWLGGFRSSELLKLLVNQLEPLTEQQLVGITNLQQSSQQAEDALSQGMEALQQSLAETLSSGSLGSSSSSGNVANYMGQMAMAMGKLGTLEGFIRQADNLRQQTLQQMHRILTTRQSARALLAVHDYFSRLRALSSLWLARPRE 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 547250 553546 - Cp4.1LG07g01040.1 Cpe07g00106 471913
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00106 333 PANTHER TRANSCRIPTION FACTOR TGA9 4 333 - -
Cpe07g00106 333 PANTHER TRANSCRIPTION FACTOR TGA2.3-LIKE ISOFORM X1 4 333 - -
Cpe07g00106 333 Pfam bZIP transcription factor 48 88 IPR004827 GO:0003700|GO:0006355
Cpe07g00106 333 SMART brlzneu 44 107 IPR004827 GO:0003700|GO:0006355
Cpe07g00106 333 Coils Coil 67 94 - -
Cpe07g00106 333 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 46 90 IPR004827 GO:0003700|GO:0006355
Cpe07g00106 333 SUPERFAMILY Leucine zipper domain 48 91 IPR046347 GO:0003700|GO:0006355
Cpe07g00106 333 Pfam Seed dormancy control 130 205 IPR025422 GO:0006351|GO:0043565
Cpe07g00106 333 Gene3D - 47 99 - -
Cpe07g00106 333 ProSiteProfiles DOG1 domain profile. 113 330 IPR025422 GO:0006351|GO:0043565
Cpe07g00106 333 Coils Coil 124 144 - -
Cpe07g00106 333 MobiDBLite consensus disorder prediction 11 26 - -
Cpe07g00106 333 MobiDBLite consensus disorder prediction 1 49 - -
Cpe07g00106 333 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 51 66 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01198 Cpe-Chr1:7130946 Cpe07g00106 Cpe-Chr7:547250 3.33E-163 dispersed
Cpe07g00106 Cpe-Chr7:547250 Cpe08g01342 Cpe-Chr8:9665720 0 dispersed
Cpe20g00685 Cpe-Chr20:4812582 Cpe07g00106 Cpe-Chr7:547250 3.73E-99 dispersed
Cpe07g00106 Cpe-Chr7:547250 Cpe03g00448 Cpe-Chr3:2531607 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49707 PF14144 DOG1 6.90E-32 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00106 K14431 - csv:101213210 583.178