Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00108 ATGGAAGAGCGGGACGTCCAAACGCAACCCTCGATTGAATCCCGCCTTCGCAACCTCTTCTGTCACTCTCCAATGACCAATTTTCTGTACAAAGTTCCTCTGCGTCTCTTTGCTCAAGATCTCCAGAAGTTTGCAGGGAACGACACCACAATTGCCCGCAAATTCCTCTCTTCTCTGTCTGAAATCTCTGAATCAACCAACAATCGGACGATCGACTACCTTGTTCATACCCTTGGATTCTCCAAGGACTCAGCTCTCGCCGCTGCGAAGCGAATCCATCTCAAAACTACTGCAAATCCCGACTCTGTCATTGCTCTCTTCAAGGCCTATGGATTCACACTGTCCGATACTGCCAGCATCTTTTGCAGAAATCCTAATCTCCTCCTTGCTGATCCGGACACAACACTCAAACCTAAGTTTGAGTTTCTCTCTCGAAATGGTTTCACCGGTCATTTTCTCGTCGACAAGCAGATTGTTCCGTGTATTGATTTTCTCAGAAATTTCTTTGGCTCTACTGATGGTCTAGTCTCGCTCTTTTCTGCTAGACGTGGGACTTGGGTTTTGCACAACTTTTCAGCATCTGTGGCTCCCAATATCGAACTATTGAGAGCTAATGGCGTGCTTGATTCGAACATCGCGAAGATGATTTGGGCGCGCCCGAGGACACTAGCAAGGGATGCGGAAGAGTTCAGTGACATCGTCGAGAAGACGAAGGAAGCTGGTTTTAATCCTTCGAGCCCGATGTTTATTTATGGGTTGTGTACGTTTTCAGTGATGAAAAAGGACAAATGGTTATCGAAACTGCATATTTTTACAAGTTCTGGGTGGTCAGCGGAGCAGTTTCAATCTCTATTTCTCAAGCAGCCCACGTTTATGTATTCGTCTGAAGAGCAAATAAAGAGGGCCTTGGATTTCTTGATGAACAAATTGGACTGGACGCACGAAGAAATTTGCAAGTACCCAAATGTACTTTATCTTAGTTTTGAAAAAAGGGTGGTTCCGCGGTCGTCTATTCTTCAGCACCTGATATCAAAAGGTTTTATCAAGAAGACAAGTTTTGGCAGAGCATTTTTGATTAGCGAGGATAAGTTTTTGGTCAATATCTTTCTGAGGACCCACATCTACTTGAGATGTACCAGAAGAAGATGGCAGTTTTATAAACGCTTGGAGTGCAATTCAGAGCGGGACGTCCAAACGCAACCCTCGATTGAATCCCGCCTTCGCAACCTCTTCTGTCACTCTCCAATGACCAATTTTCTGTTCAAAGTTCCTCTGCGTCTCTTTGCTCAAGATCTCCAGAAGTTTGCAGGGAACGACACCACAATTTCCCGCAAATTCCTCTCTTCTCTGTCTGAAATCTCTGAATCAACCAACAATCGGACGGTCGACTACCTTGTTCATACCCTTGGATTCTCCAAGGACTCAGCTCTCGCCGCTGCGAAGCGAATCCATCTCAAAACTACTGCAAATCCCGACTCTGTCATTGCTCTCTTCAAGGCCTATGGATTCACACTGTCCGATACTGCCAGCATCTTTTGCAGAAATCCTAATCTCCTCCTTGCTGATCCGGACACAACACTCAAACCTAAGTTTGAGTTTCTCTCTCGAAATGGTTTCACCGGTCATGTTCTCGTCGACGTGATCTCTAGGGACCCGTCAATTCTTAGAAGGAGTTTGAAGAAGCAGATTGTTCCGTGTATTGATTTTCTCAGAAATTTTTTTGGCTCTACTGATGGTGTAATCTCGCTCTTTTCTGCTAGACGTGGGACTTGGGTTTTGCGAAACTTTTCAGAATCTGTGGCTCCCAATATCGAACTATTGAGAGCTAATGGCGTGCCCGATTCGAACATCGCGAAGATTTTTTGGGTGCGCCCGAGGACACTAGCAAGGGATGCGGAAGAGTTCAGTGACATCGTCGAGAAGACGAAGGAAGCTGGTTTTAATCCTTCGAGCCCGATGTTTACTTATGGGCTGTGTACGTTTTTAGGGATGAAAAAGGACAAATGGTTGTCGAAACTGCAAATTTTTACAAGTTTTGGGTGGTCAGAGGAGCAGTTTCAATCTCTATTTCTCAAGCAGCCCACGATTATGAATTCGTCTGAAGAGCAAATAAAGAAGGCCTTGGATTTCTTGATGAACAAATTGGACTGGACGCACGAAGAAATTTGCAAGTACCCAAATGTACTTTATCTTAGTTTTGAAAAGAGGGTGGTTCCGAGGTCGTCTATTCTTCAGCACCTGATATCAAAAGGTTTTATCAAGAAGACAAATTTTGGCAGAGCATTTATGATTAGCGAGGATAAGTTTTTGGTCAATATCTTTCTGAGTATCCACATCTACTTGAGATGTACCAGAAGAAGATGGCAGTTTTATAAACGCTTGGAGTGCAATTCAGTTCCTCTGCGTATCTTTGCTCAAGATCTCCAGAAGTTTGCAGGGAACGACACCACAATTGCCCGCAAATTCCTCTCTTCTCTGTCTGAAATCTCTGAATCAACCAACAATCGGACGATCGACTACCTTGTTCATACCCTTGGATTCTCCAAGGACTCAGCTCTCGCCGCTGCGAAGCGAATCCATCTCAAAACTACTGCAAATCCCGACTCTGTCATTGCTCTCTTCAAGGCCTATGGATTCACACTGTCCGATACTGCCAGCATCTTTTGCAGAAATCCTAATCTCCTCCTTGCTGATCCGGACACAACACTCAAACCTAAGTTTGAGTTTCTCTCTCGAAATGGTTTCACCGGTCATGTTCTCGTCGATGTGATCTCTAGTGATCCGGAAATTCTTAGAAGGAGTTTGAAGAAGCAGATTGTTCCGTGTATTGATTTTCTCAGAAATTTTTTTGGCTCTACTGATAAGTTTGCAGGGAACGACACCACAATTGCCCGCAAATTCCTCTCTTCTCTGTCTGAAATCTCTGAATCAACCAACAATCGGACGATCGACTACCTTGTTCATACCCTTGGATTCTCCAAGGACTCAGCTCTCGCCGCTGCGAAGCGAATCCATCTCAAAACTACTGCAAATCCCGACTCTGTCATTGCTCTCTTCAAGGCCTATGGATTCACACTGTCCGATACTGCCAGCATCTTTTGCAGAAATCCTAATCTCCTCCTTGCTGATCCGGACACAACACTCAAACCTAAGTTTGAGTTTCTCTCTCGAAATGGTTTCACCGGTCATGTTCTCGTCGACGTGATCTCTAGGGACCCTTCAATTCTTAGAAGGAGTTTGAAGAAGCAGATTGTTCCGTGTATTGATCTTCTCAGAATTTTTTTTGGCTCTACTGATGGTATAGTCTCGCTCTTTTCTGCTAGAGGTGGGACTTGGGTTTTGCGAAACTTTTCAGAATCTGTGGCTCCCAATATCGAACTATTGAGAGCTATTGGCGTGCCTGATTCGAAGATCGCGAAGATCTTTTGGGTGCGCCCGTGGACACTAGCAAGGGATGCGGAAGAGTTCAGTGACATCGTCGAGAAGACGAAGGAAGCTGGTTTTAGTCCTTCGAGTCCGATGGATGAAAAAGGACAAATGGTTATCGAAACTGCACATTTTTACAAGTTTTGGGTGGTCAGAGGAGCAGTTTCAATCTCTATTTCTCAAGCAGCCCACGCCTATGGATTCACACTGTCCGATACTGCCAGCATCTTTTGCAGAAATCCTCATCTCCTCCTTGCTGATCCGGACACAACACTCAAACCTAAGTTTGAGTTTCTCTCTCGAAATGGTTTCACCGGTCATGTTCTCGTCGATGTGATCTCTAGGGACCCGGAAATTCTTAGAAGGAGTTTGAAGAAGCAGATTGTTCCGTGTATTGATTTTCTCAGAAATTTTTTTGGCTCTACTGATGTTCTAGTCTCGCTCTTTTCTGCTAGACGTGGGACTTGGGTTTTGCGCAAGTTTTCAGAATCTGTGGCTCCCAATATCGAACTATTGAGAGCTATTGGCGTGCCTGATTCGAAGATCGCGAAGATCTTTTGGGTGCGCCCGTGGACACTAGCAAGGGATGCGGAAGAGTTCAGTGACATCGTCGAGAAGACGAAGGAAGCTGGTTTTAGTCCTTCGAGTCCGATGTTTATTTATGGGCTGTGTACGTTTTCAGGGATGAAAAAGGACAAATGGTTATCGAAACTGCACATTTTTACAAGTTTTGGGTGGTCAGAGGAGCAGTTTCAATCTCTATTTCTCAAGCAGCCCACGTTTATGAATTCGTCTGAAGAGAAAATAAAGAGGGCCTTGGATTTCTTTATGAACAAATTGGACTGGACGCACGAAGAAATTTCCAGGTACCCAATTGTACTTTATCTTAGTTTTGAAAAAAGGGTGGTTCCGAGGTCGTCTATTCTTCAGCACCTGGTGTCAAAAGGTTTTATCAAGAAGACAAGTTTTGGCAGAGCATTTATGATTAGCGAGGATAAGTTTTTGGTCAAGTTTGTGATGCAGTATCTTTCTGAGGACCCACATCTACTTGAGATGTACCAGAAGAAGATGGCAAGGTGA 4506 44.54 MEERDVQTQPSIESRLRNLFCHSPMTNFLYKVPLRLFAQDLQKFAGNDTTIARKFLSSLSEISESTNNRTIDYLVHTLGFSKDSALAAAKRIHLKTTANPDSVIALFKAYGFTLSDTASIFCRNPNLLLADPDTTLKPKFEFLSRNGFTGHFLVDKQIVPCIDFLRNFFGSTDGLVSLFSARRGTWVLHNFSASVAPNIELLRANGVLDSNIAKMIWARPRTLARDAEEFSDIVEKTKEAGFNPSSPMFIYGLCTFSVMKKDKWLSKLHIFTSSGWSAEQFQSLFLKQPTFMYSSEEQIKRALDFLMNKLDWTHEEICKYPNVLYLSFEKRVVPRSSILQHLISKGFIKKTSFGRAFLISEDKFLVNIFLRTHIYLRCTRRRWQFYKRLECNSERDVQTQPSIESRLRNLFCHSPMTNFLFKVPLRLFAQDLQKFAGNDTTISRKFLSSLSEISESTNNRTVDYLVHTLGFSKDSALAAAKRIHLKTTANPDSVIALFKAYGFTLSDTASIFCRNPNLLLADPDTTLKPKFEFLSRNGFTGHVLVDVISRDPSILRRSLKKQIVPCIDFLRNFFGSTDGVISLFSARRGTWVLRNFSESVAPNIELLRANGVPDSNIAKIFWVRPRTLARDAEEFSDIVEKTKEAGFNPSSPMFTYGLCTFLGMKKDKWLSKLQIFTSFGWSEEQFQSLFLKQPTIMNSSEEQIKKALDFLMNKLDWTHEEICKYPNVLYLSFEKRVVPRSSILQHLISKGFIKKTNFGRAFMISEDKFLVNIFLSIHIYLRCTRRRWQFYKRLECNSVPLRIFAQDLQKFAGNDTTIARKFLSSLSEISESTNNRTIDYLVHTLGFSKDSALAAAKRIHLKTTANPDSVIALFKAYGFTLSDTASIFCRNPNLLLADPDTTLKPKFEFLSRNGFTGHVLVDVISSDPEILRRSLKKQIVPCIDFLRNFFGSTDKFAGNDTTIARKFLSSLSEISESTNNRTIDYLVHTLGFSKDSALAAAKRIHLKTTANPDSVIALFKAYGFTLSDTASIFCRNPNLLLADPDTTLKPKFEFLSRNGFTGHVLVDVISRDPSILRRSLKKQIVPCIDLLRIFFGSTDGIVSLFSARGGTWVLRNFSESVAPNIELLRAIGVPDSKIAKIFWVRPWTLARDAEEFSDIVEKTKEAGFSPSSPMDEKGQMVIETAHFYKFWVVRGAVSISISQAAHAYGFTLSDTASIFCRNPHLLLADPDTTLKPKFEFLSRNGFTGHVLVDVISRDPEILRRSLKKQIVPCIDFLRNFFGSTDVLVSLFSARRGTWVLRKFSESVAPNIELLRAIGVPDSKIAKIFWVRPWTLARDAEEFSDIVEKTKEAGFSPSSPMFIYGLCTFSGMKKDKWLSKLHIFTSFGWSEEQFQSLFLKQPTFMNSSEEKIKRALDFFMNKLDWTHEEISRYPIVLYLSFEKRVVPRSSILQHLVSKGFIKKTSFGRAFMISEDKFLVKFVMQYLSEDPHLLEMYQKKMAR 1501
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 560503 579462 - Cp4.1LG07g01080.1 Cpe07g00108 471915

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00108 1501 PANTHER CGI-12 PROTEIN-RELATED 956 1178 IPR003690 GO:0003690|GO:0006355
Cpe07g00108 1501 PANTHER CGI-12 PROTEIN-RELATED 424 772 IPR003690 GO:0003690|GO:0006355
Cpe07g00108 1501 Gene3D Transcription termination factor 3, mitochondrial 850 1000 IPR038538 -
Cpe07g00108 1501 Gene3D Transcription termination factor 3, mitochondrial 586 780 IPR038538 -
Cpe07g00108 1501 Gene3D Transcription termination factor 3, mitochondrial 1298 1492 IPR038538 -
Cpe07g00108 1501 Gene3D Transcription termination factor 3, mitochondrial 473 585 IPR038538 -
Cpe07g00108 1501 Gene3D Transcription termination factor 3, mitochondrial 1199 1297 IPR038538 -
Cpe07g00108 1501 Gene3D Transcription termination factor 3, mitochondrial 1001 1174 IPR038538 -
Cpe07g00108 1501 Gene3D Transcription termination factor 3, mitochondrial 153 374 IPR038538 -
Cpe07g00108 1501 Gene3D Transcription termination factor 3, mitochondrial 82 152 IPR038538 -
Cpe07g00108 1501 SMART mt_12 719 753 IPR003690 GO:0003690|GO:0006355
Cpe07g00108 1501 SMART mt_12 1426 1460 IPR003690 GO:0003690|GO:0006355
Cpe07g00108 1501 SMART mt_12 282 313 IPR003690 GO:0003690|GO:0006355
Cpe07g00108 1501 SMART mt_12 965 993 IPR003690 GO:0003690|GO:0006355
Cpe07g00108 1501 SMART mt_12 1139 1169 IPR003690 GO:0003690|GO:0006355
Cpe07g00108 1501 SMART mt_12 820 848 IPR003690 GO:0003690|GO:0006355
Cpe07g00108 1501 SMART mt_12 213 243 IPR003690 GO:0003690|GO:0006355
Cpe07g00108 1501 SMART mt_12 885 916 IPR003690 GO:0003690|GO:0006355
Cpe07g00108 1501 SMART mt_12 1030 1061 IPR003690 GO:0003690|GO:0006355
Cpe07g00108 1501 SMART mt_12 444 472 IPR003690 GO:0003690|GO:0006355
Cpe07g00108 1501 SMART mt_12 1325 1355 IPR003690 GO:0003690|GO:0006355
Cpe07g00108 1501 SMART mt_12 687 718 IPR003690 GO:0003690|GO:0006355
Cpe07g00108 1501 SMART mt_12 652 682 IPR003690 GO:0003690|GO:0006355
Cpe07g00108 1501 SMART mt_12 1394 1425 IPR003690 GO:0003690|GO:0006355
Cpe07g00108 1501 SMART mt_12 509 540 IPR003690 GO:0003690|GO:0006355
Cpe07g00108 1501 SMART mt_12 53 81 IPR003690 GO:0003690|GO:0006355
Cpe07g00108 1501 SMART mt_12 1252 1284 IPR003690 GO:0003690|GO:0006355
Cpe07g00108 1501 SMART mt_12 314 348 IPR003690 GO:0003690|GO:0006355
Cpe07g00108 1501 SMART mt_12 1066 1098 IPR003690 GO:0003690|GO:0006355
Cpe07g00108 1501 SMART mt_12 1216 1247 IPR003690 GO:0003690|GO:0006355
Cpe07g00108 1501 SMART mt_12 921 953 IPR003690 GO:0003690|GO:0006355
Cpe07g00108 1501 SMART mt_12 118 149 IPR003690 GO:0003690|GO:0006355
Cpe07g00108 1501 SMART mt_12 545 577 IPR003690 GO:0003690|GO:0006355
Cpe07g00108 1501 Pfam mTERF 1371 1477 IPR003690 GO:0003690|GO:0006355
Cpe07g00108 1501 Pfam mTERF 1207 1355 IPR003690 GO:0003690|GO:0006355
Cpe07g00108 1501 Pfam mTERF 155 365 IPR003690 GO:0003690|GO:0006355
Cpe07g00108 1501 Pfam mTERF 599 770 IPR003690 GO:0003690|GO:0006355
Cpe07g00108 1501 Pfam mTERF 496 648 IPR003690 GO:0003690|GO:0006355
Cpe07g00108 1501 Pfam mTERF 872 1093 IPR003690 GO:0003690|GO:0006355
Cpe07g00108 1501 Pfam mTERF 1017 1169 IPR003690 GO:0003690|GO:0006355
Cpe07g00108 1501 PANTHER - 1203 1498 - -
Cpe07g00108 1501 PANTHER - 424 772 - -
Cpe07g00108 1501 PANTHER CGI-12 PROTEIN-RELATED 33 367 IPR003690 GO:0003690|GO:0006355
Cpe07g00108 1501 PANTHER CGI-12 PROTEIN-RELATED 1203 1498 IPR003690 GO:0003690|GO:0006355
Cpe07g00108 1501 PANTHER - 956 1178 - -
Cpe07g00108 1501 PANTHER - 801 956 - -
Cpe07g00108 1501 PANTHER - 33 367 - -
Cpe07g00108 1501 PANTHER CGI-12 PROTEIN-RELATED 801 956 IPR003690 GO:0003690|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00108 K15032 MTERFD; mTERF domain-containing protein, mitochondrial - csv:101219073 483.411
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00108 Cpe-Chr7:560503 Cpe07g00110 Cpe-Chr7:585247 1.96E-86 dispersed
Cpe07g00108 Cpe-Chr7:560503 Cpe07g00109 Cpe-Chr7:580149 3.33E-26 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g391 . . . . . . . . . . . . . . . . Cpe07g00108 . . . . . . . . . . . . . . Cone4ag1349 Cone7ag1582 . . . . . . . . . . . . . . . . . Cma12g00128 . . . . . . . . . . . . . . . . . . . Lsi08g00930 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014402 0 0 0 0 0 0 0 0 0 2 0 0 2 1 2 2 0 3 3 0 2 0 0 1 1 1 1 0 1 0 22
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49708 PF02536 mTERF 1.50E-22 No_clan Cpe TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe07g00108 Cpe_Chr07 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.243103 0.0 0.0 0.0