Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00118 ATGGAGACAAATTTCCTGTTCTTCCTTCTACTGTTCGATCACCGCCGGTCCGATTCCGGCAGCATGGACCGACAACTTTGGCAGGCTTTTGCCGGTAAGTCTGTCCATATTCACACTGTCGGTTCTGAGGTTTACTATTTCGTACAAGGACATGTCGAGCAAGCTACATACATACCATCACTATCTCAGTCTGTTCTTTCTAATCCCGCCACTAAATGTCTCGTTACTGGCACTGATTTTCATGCCGATTCTCTTTCTGATGAAGTCTGCATTAAGTTGAATCTTCATCCCATTCGGCCTGGTCGGGATGAGTCTGTTGTGGTTTCTCGATTTGGTCGTTGTGATGATAATGGCGGGGAGAGGGATAAGATTGAGTCGTTTGCTAAGATTCTTACGTCTTCTGATGCTAATAATGGCGGTGGATTCTCTGTGCCGCGGTGCTGTGCGGATTCTGTTTTTCCTCCCTTGAATTACCAGGCTGATCCGCCGGTGCAGACTTTGTCGATTACTGATGTTCATGGAGTTGTTTGGAATTTTCGTCACATTTACCGTGGGACGCCGAGGCGGCATTTGCTCACTACTGGGTGGAGTAAGTTCGTTAATCACAAGAAGCTGATTGCCGGTGATTCCGTCGTTTTCGCGAAGAATCTTAGAGGGGATATGTTCGTTGGCATTCGTCGTGCCTCAACCTCTATCACAAGGGCTATTTCAGGCGGTGATTGCGGCCGGTGGAATAGCCAGAATGGTGGAGCAAGATGCAGTTTGGAGGAGAATTGTTCTGGCGATGGAGGAACAAAAGTTTTCTCCCGGAGGAATATTGGGAAGCTGCCGGCCGAGGCAGTTGCCAACGCTGCGGAATTGGCCGCGCAATTTAAGCCATTCGAGTTGGTTTATTATCCTAGGGCTGGTCGGTCGGAATTTGTTGTTCAAGTCGAGAAGGTGAATAAATCGAAGAATTATCAGTGGTATTCTGGAACAAGAGTGAAAATGGCCATGGAGACCGAGTATTCGAAGATGACATGGTATCAAGGGACTGTAACCTCAGCATCTGTTCCTGAGCACGGACCTTGGATGGGTTCTCCATGGCGTATGCTTGAGGTTACATGGGATGAAATTGATGCTCTGCAGAGTGCTAAGTATGTGAGCCCTTGGGAAGTTGAACTAGCTACGCCCACTCCTCCAATACAACCTCCTCTTCACCCAGCAAAGAAGTTTAGAGGTCTCCCGAAATCTGGGATGCTGAATGGTGAAGCAGAGCTGTTTTCACCTCTGATGAATTTCGTTGATTCAACAATGGAACAATTCAACCCATCATTGTTGAATCTCAACTCTTTTCCTGCTGGCATGCAGGGAGCCAGGCAAAAGTTATTCTGTGAATCTAGGTTATTCAACCCATGTAAAGAAATGACCCCACTAACATGTGATGAAAGTTCCATGAGCGAGCTGAATGCTGCGAAGACAATGCAAATGGTGTCTACTGACCTCCTTATTGGTAGTGTGCAGTTTGATACCTTGTCGTCTGATAGTCAGGCTAGTGTTCTTTCCTTTGCCACAGGAACTGCTGAGAACCAGAACTGCTGCAACTCAGCTAAAGCTGGAGTAAATTCAATTCAGTTGTTTGGTCAAGTCATCTATATGAACCCGCCTGTTGAAAATGGACTTGAAAATGGTGTTAGCACTAATGATGGTGGCAAGAATCTTAATCAGTACTTGGGGCAGGGCAGGCAGGAAGCTGACTACAATATGAACATTGGCAGTAGATATTTCTCTCCCGCCTCCCATTCTTCTCCGGTAAATAAAGAAGAGGATGATGGAGAAGATGGGAATAAAGCAGGAGATGAGCTTCACGGATTGAGTTTGCAGGCCCTCATCAACGTATACCGAGAAGCGTTTCTCGATGGAGATCAAAAGACTATTTCTAAAGTTGAAGCGAAACTAAAAAATTTCGAAAGGGAGAAGGACGGGTTATTTCAGAAAGTATCGAATACGTCGGCCGAGATAACATCTGGAAAAGAGAACTATATACGTTTACAAGCTGATTTTGATAATTTTAGGAAAAGATCAGAAAAAGAAAGACTTACCGTGAAGAACAATGCCCAAAAAGAGGTTATTGAGAATCTATTACCAATGATCGACAGTTTTGAGAAGGCCAGACAACAAATTGTTCCTCAAACTGACAAGGAGAAGAAAATTGATGTAAGCTACCAGGGTATATACAAACAATTTGTGGAGGTGCTGAGGAGCTGGCGCATCTCTGCTGTTGCCGCAGTAGGAAGGCCATTTGATCCTTCATTACATGAGGCTGTAGCTCGAGAGGAGTCGCAAGAGATCAAGGAAGGGATCATAATTCAAGAATTACGACGCGGGTTTCTGCTCGGAGAACGACTTCTAAGACCAGCAAGAGTAAAAGTATCAAAAGGTCCAGGTAAGAAGAATTCCCCCACAACCAACTCCGACATACCGACCGAGCAACCTGCAACTGCTACTGCTAGATTAGACGAACACTAA 2508 45.45 METNFLFFLLLFDHRRSDSGSMDRQLWQAFAGKSVHIHTVGSEVYYFVQGHVEQATYIPSLSQSVLSNPATKCLVTGTDFHADSLSDEVCIKLNLHPIRPGRDESVVVSRFGRCDDNGGERDKIESFAKILTSSDANNGGGFSVPRCCADSVFPPLNYQADPPVQTLSITDVHGVVWNFRHIYRGTPRRHLLTTGWSKFVNHKKLIAGDSVVFAKNLRGDMFVGIRRASTSITRAISGGDCGRWNSQNGGARCSLEENCSGDGGTKVFSRRNIGKLPAEAVANAAELAAQFKPFELVYYPRAGRSEFVVQVEKVNKSKNYQWYSGTRVKMAMETEYSKMTWYQGTVTSASVPEHGPWMGSPWRMLEVTWDEIDALQSAKYVSPWEVELATPTPPIQPPLHPAKKFRGLPKSGMLNGEAELFSPLMNFVDSTMEQFNPSLLNLNSFPAGMQGARQKLFCESRLFNPCKEMTPLTCDESSMSELNAAKTMQMVSTDLLIGSVQFDTLSSDSQASVLSFATGTAENQNCCNSAKAGVNSIQLFGQVIYMNPPVENGLENGVSTNDGGKNLNQYLGQGRQEADYNMNIGSRYFSPASHSSPVNKEEDDGEDGNKAGDELHGLSLQALINVYREAFLDGDQKTISKVEAKLKNFEREKDGLFQKVSNTSAEITSGKENYIRLQADFDNFRKRSEKERLTVKNNAQKEVIENLLPMIDSFEKARQQIVPQTDKEKKIDVSYQGIYKQFVEVLRSWRISAVAAVGRPFDPSLHEAVAREESQEIKEGIIIQELRRGFLLGERLLRPARVKVSKGPGKKNSPTTNSDIPTEQPATATARLDEH 835
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 659616 667476 - Cp4.1LG07g01180.1 Cpe07g00118 471925

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00118 835 MobiDBLite consensus disorder prediction 590 613 - -
Cpe07g00118 835 PANTHER AUXIN RESPONSE FACTOR 18 581 - -
Cpe07g00118 835 SUPERFAMILY DNA-binding pseudobarrel domain 122 229 IPR015300 -
Cpe07g00118 835 CDD GrpE 671 804 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Cpe07g00118 835 Pfam Auxin response factor 284 365 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cpe07g00118 835 SMART B3_2 127 229 IPR003340 GO:0003677
Cpe07g00118 835 Gene3D Head domain of nucleotide exchange factor GrpE 751 806 IPR009012 GO:0006457
Cpe07g00118 835 ProSitePatterns grpE protein signature. 761 804 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Cpe07g00118 835 SUPERFAMILY Coiled-coil domain of nucleotide exchange factor GrpE 656 748 IPR013805 -
Cpe07g00118 835 MobiDBLite consensus disorder prediction 597 613 - -
Cpe07g00118 835 Gene3D - 322 392 - -
Cpe07g00118 835 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677
Cpe07g00118 835 PRINTS GrpE protein signature 703 718 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Cpe07g00118 835 PRINTS GrpE protein signature 675 691 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Cpe07g00118 835 PRINTS GrpE protein signature 785 804 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Cpe07g00118 835 PRINTS GrpE protein signature 758 773 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Cpe07g00118 835 SUPERFAMILY Head domain of nucleotide exchange factor GrpE 753 808 IPR009012 GO:0006457
Cpe07g00118 835 MobiDBLite consensus disorder prediction 802 835 - -
Cpe07g00118 835 Coils Coil 632 666 - -
Cpe07g00118 835 Gene3D - 634 747 IPR013805 -
Cpe07g00118 835 Gene3D - 124 228 IPR015300 -
Cpe07g00118 835 MobiDBLite consensus disorder prediction 809 825 - -
Cpe07g00118 835 CDD B3_DNA 126 227 IPR003340 GO:0003677
Cpe07g00118 835 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 18 581 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cpe07g00118 835 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Cpe07g00118 835 Hamap Protein GrpE [grpE]. 599 806 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Cpe07g00118 835 Pfam GrpE 650 806 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00118 - - - csv:101216118 777.704
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00118 Cpe-Chr7:659616 Cpe19g00413 Cpe-Chr19:3647403 6.65E-110 dispersed
Cpe10g01091 Cpe-Chr10:6666956 Cpe07g00118 Cpe-Chr7:659616 6.41E-58 dispersed
Cpe19g00233 Cpe-Chr19:1933041 Cpe07g00118 Cpe-Chr7:659616 4.01E-57 dispersed
Cpe11g00421 Cpe-Chr11:2374184 Cpe07g00118 Cpe-Chr7:659616 1.59E-48 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g338 . . . . . . . . . . . . . Car12g00130 Sed04g0119 . Cpe07g00118 Bhi04g00711 Tan02g2357 Cmetu03g1212 . Hepe10g0529 . . Cla08g01087 Cam08g1539 Cec08g1113 Cco08g1240 Clacu08g1242 . Cre08g1023 . . . . . Csa04g01882 . Cme03g01499 . . . . . . . Bma02g00258 . . . Cma12g00139 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006011 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49710 PF01025 GrpE 1.80E-38 No_clan Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe07g00118 Cpe_Chr07 FPKM 0.0 0.0 0.274072 0.207756 0.0 0.0 0.0 0.0 0.0 0.0