Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00123 ATGCAAAACTACTCAGTAATGCACTGGTCTCCATTGCTTCGGAGAGGCAAAGAAGTACTCAATGTGGCTAAACAAATTGTTCCCACCGTGAAACGCCCTGGAGTCTCATCCCAGTCACTGTCTAGAGTTCAGATAAGTGCAATGTCAGTTAAGGAGAACTTGATTGTGGCTGGTGGTTTCCAAGGGGAACTAATTTGCAAGTATTTGAATCATCCTGGAGTTGCATTTTGCACCAAAATGACAACGGAAGAAAATGCCATCACAAATGCTGTTGATATATTTCATAATCCCAATGGTGCAATGAGGATCGTCACAGGAAATAATGATGCAAAAGTTAGGATTTACGATGCCAAGACTTTTGCTTGCCTTAACGGCTTCACATTTGGCTGGTCCGTAAATAACACCTCTGTTAGTCCTGATGGGAGGATGCTTGCAGTCCTTGGGGATACTACAGAGTGCCTGCTTGCAGATGCCAACTCTGGCAAGGTGATTGAGAGCCTCAAAGGGCACTTAGATTACTCTTTTGCTTCTGCCTGGCACCCTGATGGAAACATTTTGGCCACTGGGAACCAAGACACCACCTGCAGGCTGTGGGACATAAGGAATACGTCCAAGTCCCTAGCTGTGCTCAAGGGAAGAATGGGAGCAATCAGATGCGTCAAATTCAGTTTGGATGGTAAATTCCTGTCGATGGCTGAGCCTGCAGATTTCGTCCATATCTATGAAAGTCGCACAGGTTATGAACAAGCACAAGAAATCGATATGTTTGGGGAAATTGCTGGAATATCCTTTAGTCCCGACACTGAAGCTCTGTTCGTTGGCGTTGCCGATCGAACCTATGGTAGTGTATTGGAGTTTAACAAACGACACCATAATAAGTACATAGATTCCATCTTCTAG 900 44.78 MQNYSVMHWSPLLRRGKEVLNVAKQIVPTVKRPGVSSQSLSRVQISAMSVKENLIVAGGFQGELICKYLNHPGVAFCTKMTTEENAITNAVDIFHNPNGAMRIVTGNNDAKVRIYDAKTFACLNGFTFGWSVNNTSVSPDGRMLAVLGDTTECLLADANSGKVIESLKGHLDYSFASAWHPDGNILATGNQDTTCRLWDIRNTSKSLAVLKGRMGAIRCVKFSLDGKFLSMAEPADFVHIYESRTGYEQAQEIDMFGEIAGISFSPDTEALFVGVADRTYGSVLEFNKRHHNKYIDSIF 299
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 693796 698501 + Cp4.1LG07g01300.1 Cpe07g00123 471930

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00123 299 ProSitePatterns Trp-Asp (WD) repeats signature. 186 200 IPR019775 -
Cpe07g00123 299 Gene3D - 71 296 IPR015943 GO:0005515
Cpe07g00123 299 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 167 202 - -
Cpe07g00123 299 PANTHER OS03G0386000 PROTEIN 1 299 - -
Cpe07g00123 299 ProSiteProfiles Trp-Asp (WD) repeats profile. 167 208 IPR001680 GO:0005515
Cpe07g00123 299 Pfam WD domain, G-beta repeat 162 199 IPR001680 GO:0005515
Cpe07g00123 299 SMART WD40_4 61 116 IPR001680 GO:0005515
Cpe07g00123 299 SMART WD40_4 203 242 IPR001680 GO:0005515
Cpe07g00123 299 SMART WD40_4 119 157 IPR001680 GO:0005515
Cpe07g00123 299 SMART WD40_4 160 199 IPR001680 GO:0005515
Cpe07g00123 299 PANTHER WD REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_8G05640)-RELATED 1 299 - -
Cpe07g00123 299 SUPERFAMILY WD40 repeat-like 43 279 IPR036322 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00123 - - - csv:101222353 561.607
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe07g00123 Cpe11g00427 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00123 Cpe-Chr7:693796 Cpe08g00844 Cpe-Chr8:6692993 2.88E-129 dispersed
Cpe11g00427 Cpe-Chr11:2410602 Cpe07g00123 Cpe-Chr7:693796 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g386 . Blo12g00699 . Bda03g00499 . Bpe04g00454 . . Cmo05g00510 Cmo12g00116 . . . Car12g00136 . . Cpe07g00123 Bhi04g00741 . . . . . . Cla08g01095 Cam08g1549 Cec08g1122 Cco08g1249 Clacu08g1251 . Cre08g1033 . . . Cone20ag0496 . Csa04g01842 . Cme03g01509 . . . . . . . . . . Cmo09g00636 Cma12g00147 Cma05g00488 Car05g00436 . Cpe11g00427 . . . . . . . . . . . . . . . Lsi08g00951 . Chy07g00699 Cme07g00918
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001293 1 12 1 1 1 1 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 1 2 2 5 2 1 74
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe07g00123 Cpe_Chr07 FPKM 7.254726 8.216465 14.562951 11.591697 17.878544 22.485641 18.471016 18.023388 19.227831 15.641341