Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00124 ATGCCTGCTTTGATGGATTTCTATGGTTGCAGAGATCTTCAGTCGTATCCAGTTGGTGGTGAATTAATGGAAGCGCTTGAACCTTTTATGAAAGCTGCTTCCTCTTCTTCTTCTTCTTTCCTTCCTTCCTTTTCTCCTTCTTCTTCATCTTTCGTTCCTGATTTCTCCTCTTCTTTCTCTTCAATCCAAACGGAGTCCACTTCTTATCCTTCCGATTGCTCGCCGCCGGTGGCCTATTCATATTCCGACGGGTTTTCGGCTAACAACCTTCACGGTTTGGAGCAATCGGCTTCAATCGGACTCAACTACTTGACTCCCTTTCAGATCCAACAGATCCAATCTCAATTCGGTCTTCAGACTCAGATCCAGCCGGTTTGGGGACATGTTAACAACCAGCAAGAGCTAACGAAAAACCAGATGAACGGCGTGAATTTGCTTGGCCCGAAGGCGATTCCGATGAAACATGCGGGATCTCCACCGAAATCGACGAAGCTTTATCGAGGCGTGAGGCAAAGGCATTGGGGAAAATGGGTGGCTGAGATCCGTCTACCGAGGAACCGTACTCGGCTATGGCTAGGCACCTTCGACACCGCTGAAGAAGCCGCTTTAGCCTATGACAAAGCCGCCTACAAGCTCCGAGGCGATTTCGCCAGGCTTAATTTCCCTCAGCTGAAGCACCACGGCTCCTCCGTCGGCGGCGATTTCGGCGAGTACAAGCCGCTCCACTCCGCGGTCGATGCTAAGCTCGATGCCATATGCCAAACCTTGGCTGAGTCGCAAAAACAGGGGAAATCGAACCGATCTGCCTCCTCGAGGAAGTCGAAATCATCATCGATTTCTTCCACGGTCGGATCGGAGTCTCAGGCACCGACGGTGATCGATTCTGACGACGATCAGAAGGCTAGCGATGTCAGGTCGAGTGGATCGGAGATCTGTTGCAAGGCGGAGAACTCCTCGTCGCCGGTTTCAGCCGAGAGCGACGAGTCAGCAGGATCTTCGCCTTTATCAGATCTGACGTTCCCCGATCCGACAGATTCGCCATGGGAACAGCCGTCAGAAAGCTCTATGTTGCAGAAATATCCGTCTGAAATCGATTGGGCTTCGATTTTCACTTCATGA 1119 51.3 MPALMDFYGCRDLQSYPVGGELMEALEPFMKAASSSSSSFLPSFSPSSSSFVPDFSSSFSSIQTESTSYPSDCSPPVAYSYSDGFSANNLHGLEQSASIGLNYLTPFQIQQIQSQFGLQTQIQPVWGHVNNQQELTKNQMNGVNLLGPKAIPMKHAGSPPKSTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPQLKHHGSSVGGDFGEYKPLHSAVDAKLDAICQTLAESQKQGKSNRSASSRKSKSSSISSTVGSESQAPTVIDSDDDQKASDVRSSGSEICCKAENSSSPVSAESDESAGSSPLSDLTFPDPTDSPWEQPSESSMLQKYPSEIDWASIFTS 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 705295 706413 + Cp4.1LG07g01250.1 Cpe07g00124 471931
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00124 372 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 4 369 - -
Cpe07g00124 372 Gene3D AP2/ERF domain 165 223 IPR036955 GO:0003700|GO:0006355
Cpe07g00124 372 ProSiteProfiles AP2/ERF domain profile. 165 222 IPR001471 GO:0003700|GO:0006355
Cpe07g00124 372 SMART rav1_2 165 228 IPR001471 GO:0003700|GO:0006355
Cpe07g00124 372 CDD AP2 164 222 IPR001471 GO:0003700|GO:0006355
Cpe07g00124 372 MobiDBLite consensus disorder prediction 311 360 - -
Cpe07g00124 372 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-4 4 369 - -
Cpe07g00124 372 MobiDBLite consensus disorder prediction 258 295 - -
Cpe07g00124 372 SUPERFAMILY DNA-binding domain 165 223 IPR016177 GO:0003677
Cpe07g00124 372 MobiDBLite consensus disorder prediction 258 360 - -
Cpe07g00124 372 Pfam AP2 domain 166 214 IPR001471 GO:0003700|GO:0006355
Cpe07g00124 372 PRINTS Ethylene responsive element binding protein signature 166 177 IPR001471 GO:0003700|GO:0006355
Cpe07g00124 372 PRINTS Ethylene responsive element binding protein signature 188 204 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00530 Cpe-Chr2:3145427 Cpe07g00124 Cpe-Chr7:705295 5.07E-16 dispersed
Cpe04g01002 Cpe-Chr4:9005128 Cpe07g00124 Cpe-Chr7:705295 8.07E-20 dispersed
Cpe07g00124 Cpe-Chr7:705295 Cpe08g01382 Cpe-Chr8:9925491 5.96E-24 dispersed
Cpe18g00295 Cpe-Chr18:4493873 Cpe07g00124 Cpe-Chr7:705295 4.47E-21 dispersed
Cpe10g00568 Cpe-Chr10:3330052 Cpe07g00124 Cpe-Chr7:705295 2.71E-08 wgd
Cpe11g00428 Cpe-Chr11:2423216 Cpe07g00124 Cpe-Chr7:705295 1.07E-41 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49711 PF00847 AP2 5.00E-15 CL0081 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00124 K09286 - csv:101222833 517.694