Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00138 ATGGGTCTCTTTCGATTTTCGAATTCGATTGTGTTTGTTGTTGTTTTTGGATTGATGAACATGTTCGGTTCTGGGTTTGGAGCAAGAAAGCTTGCTGCGTTGTATGAACCGCCGCCGGTGGCCATCGGTTACCGTAATGGGGCGTTGCTTGACGGCGATGTTCCTGTTTCCATTTTATGGTATGGGAAGTTTACGGCGGCTCACAAAGCTGTTCTTGTTTATATGAAAAGAGCCGGAAAGAAAGAGGCTCGGGTGATTTTAGCGAACCAAGTGACAGACGACAGCTACTCCATTGGAAAACTCCTAAAGAAGCTTCAAATTTCCGAGTTGTCACGGAGGGCCGGCTCGAAACACGGCGGCGTGACACTGGTTCTCACGGCGGAGGACGTCGCCGTCGAGGGTTTCTGTATGAGCAGCTGCGGGTTTCACGATTGGGACCACAAATCAAAATCGGCATTCATATGGGTCGGCAACTCAGTGAGTCAATGTCCGGGTCAATGCGCCTGGCCTTTCCACCAGCCCATTTACGGCCCACAAACGCCGCCGCTCATACCGCCCAACGCCGACGTCGGACTCGATGGCATGATAATCAACATCGCCACTCTTTTAGCCGGAACCGCCACGAACCCATTCGGAGACGGCTACTATCTCGGGTCGCCGGCGGCGCCGCTGGAGGTGGCGACTGCTTGCCCCGGAGTGTACGGGAAAGGGGCTTATCCGGGATACGCTGGTGACCTGCTGCAGGATGGCACCACCGGCAGCAGCTATAACGCCGTTGGCGTCGGAACCAGAAAGTACCTTTTGCCGGCGTTGTACGACCCTGTAACTGCCCGGTGTTCAACTCTCGTTTGA 852 54.58 MGLFRFSNSIVFVVVFGLMNMFGSGFGARKLAALYEPPPVAIGYRNGALLDGDVPVSILWYGKFTAAHKAVLVYMKRAGKKEARVILANQVTDDSYSIGKLLKKLQISELSRRAGSKHGGVTLVLTAEDVAVEGFCMSSCGFHDWDHKSKSAFIWVGNSVSQCPGQCAWPFHQPIYGPQTPPLIPPNADVGLDGMIINIATLLAGTATNPFGDGYYLGSPAAPLEVATACPGVYGKGAYPGYAGDLLQDGTTGSSYNAVGVGTRKYLLPALYDPVTARCSTLV 283
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 780195 781880 - Cp4.1LG07g01360.1 Cpe07g00138 471945

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00138 283 Pfam Phosphate-induced protein 1 conserved region 74 282 IPR006766 -
Cpe07g00138 283 Pfam Phosphate-induced protein 1 conserved region 44 72 IPR006766 -
Cpe07g00138 283 PANTHER PROTEIN EXORDIUM-LIKE 5 77 283 IPR006766 -
Cpe07g00138 283 PANTHER PROTEIN EXORDIUM-LIKE 5 13 72 IPR006766 -
Cpe07g00138 283 PANTHER OS02G0756800 PROTEIN 77 283 - -
Cpe07g00138 283 PANTHER OS02G0756800 PROTEIN 13 72 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00138 - - - cmax:111496456 551.977
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe07g00138 Cpe11g00443 CCT
Cpe07g00138 Cpe11g00443 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00138 Cpe-Chr7:780195 Cpe14g00205 Cpe-Chr14:1154297 9.93E-96 dispersed
Cpe07g00138 Cpe-Chr7:780195 Cpe07g00139 Cpe-Chr7:785372 2.46E-96 tandem
Cpe11g00443 Cpe-Chr11:2507835 Cpe07g00138 Cpe-Chr7:780195 9.30E-95 wgd
Cpe02g00368 Cpe-Chr2:2022338 Cpe07g00138 Cpe-Chr7:780195 1.56E-87 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g424 . . Bda01g00889 . Bpe02g00113 . . . Cmo05g00530 . . . Car01g01230 Car12g00150 Sed04g0148 . Cpe07g00138 Bhi04g00770 Tan02g2401 Cmetu03g2126 . Hepe10g0490 . Lcy13g1554 Cla08g01116 Cam08g1572 Cec08g1142 Cco08g1269 Clacu08g1273 . Cre08g1054 . . . . Lsi04g02241 Csa03g04452 . . . . Bda11g00770 . Bpe02g01125 Bpe14g00457 . . . Cmo01g01658 . . Cma05g00504 Car05g00453 . Cpe11g00443 . Bhi09g02444 Tan01g3796 . . Hepe01g2133 . . . . . . . . . Lsi08g00972 Csa02g02156 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011849 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 0 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe07g00138 Cpe_Chr07 FPKM 0.0 0.0 1.78091 0.0 3.23451 0.0 2.023707 5.222447 3.068506 5.497579