Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00148 ATGTCTCCACCACCACTTGATGTCGGGGAGGGGGAGGAATGTCGCAGCAATGTCACTCTGCTGGCTTCCTCAAACTCTATGGAGAGTGTCAGTCAAAACAATTTGGGATTTGAAGAGCGTAATTACATGGGCTTATCTGATTCTTCTTCAGAGGAGAGCTGTATGACTGCCACAAAGTCTGATGAGAACAAACCTTCGCTGAATCTTAAGGCTACTGAATTGAGGCTAGGCCTTCCTGGATCTGAATCCCCTGAGAGAGATTCAGATATCAGTTTGCGTAACTCGTCTCAATTAGATGAGAAACCGCTATTTCCTTTGCACCCATCAAATGATGGTCTCTATCCTTCACCACATAAGGCTGTTGTCTCCGGCAACAAAAGAGGGTTTTCAGATGCTATGAACGAATTCTCTGAGGGAAAATATCACTCTAACCTAGGTTTGAAACCTGGTTCTTTGCTGGAGAACCTTGGAAGTCAAATGGGAAAAGTGAAAGAGGCATCTACGCAAAAGACAACAAAACGACTGCTTCGCATTCAAGTTATGATGGATTCATTTCAGAGACGGGATAACTCTATTATGCTGCATGGGACTGAGTTGATTCTGCTTTGGAGCAATGATGAGACCCGTATTGCATTCATTGCTCTGCTCTGGAGATGTAAGGTAAGGAAAACAGTATATTTTTGTCTGCAATTGAATTGGTCATTTATTTTGATGGGCATTAAGACAGGCAGTAGCATCTAG 741 43.18 MSPPPLDVGEGEECRSNVTLLASSNSMESVSQNNLGFEERNYMGLSDSSSEESCMTATKSDENKPSLNLKATELRLGLPGSESPERDSDISLRNSSQLDEKPLFPLHPSNDGLYPSPHKAVVSGNKRGFSDAMNEFSEGKYHSNLGLKPGSLLENLGSQMGKVKEASTQKTTKRLLRIQVMMDSFQRRDNSIMLHGTELILLWSNDETRIAFIALLWRCKVRKTVYFCLQLNWSFILMGIKTGSSI 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 837726 843491 - Cp4.1LG07g01520.1 Cpe07g00148 471955

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00148 246 MobiDBLite consensus disorder prediction 41 67 - -
Cpe07g00148 246 PANTHER AUXIN-RESPONSIVE PROTEIN 15 141 - -
Cpe07g00148 246 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 15 141 IPR003311 GO:0005634|GO:0006355
Cpe07g00148 246 MobiDBLite consensus disorder prediction 80 94 - -
Cpe07g00148 246 MobiDBLite consensus disorder prediction 41 114 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00148 K14484 IAA; auxin-responsive protein IAA - csv:101221088 291.967
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01115 Cpe-Chr4:9651163 Cpe07g00148 Cpe-Chr7:837726 2.15E-13 dispersed
Cpe07g00148 Cpe-Chr7:837726 Cpe18g00416 Cpe-Chr18:5321888 5.51E-13 dispersed
Cpe11g00495 Cpe-Chr11:2872806 Cpe07g00148 Cpe-Chr7:837726 4.37E-96 wgd
Cpe19g00719 Cpe-Chr19:5622535 Cpe07g00148 Cpe-Chr7:837726 1.05E-33 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g266 . . . . . . . . . . . . . . . . Cpe07g00148 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000884 4 6 5 5 3 2 3 2 2 2 2 2 3 2 2 3 2 5 3 2 2 2 2 2 2 2 2 5 7 1 87
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe07g00148 Cpe_Chr07 FPKM 6.250432 6.47676 26.279381 28.128731 8.991192 5.727454 10.608884 28.004572 28.504503 33.489014