Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00152 ATGGTGGTTAGAAAAGTCGGCAAATACGAGGTCGGGAGGACGATTGGGGAAGGTACGTTTGCGAAGGTGAAGTTCGCTCAGAATACTGAGACTGGCGGGAGTGTTGCTATGAAAGTTCTCGATCGGAGCACCATAATCAAGCACAAGATGGTTGAACAGATAAAGAAGGAGATTTCTATCATGAAGCTTGTGAGGCACCCTTATGTTGTTCTTGCAAGCCGTACGAAGATTTATATAATCTTGGAGTACATTACTGGTGGTGAATTGTTCGACAAAATAGTTCATCATGGACGCCTTAGTGAAGCTGAATCTAGGAGATATTTCCAACAGCTAATCGATGGTGTAGATTATTGCCACAGCAAGGGAGTATATCACAGAGATTTAAAGCCTGAAAATCTGCTACTTGACTCCCTAGGTAATTTAAAGATCTCAGATTTTGGCCTGAGTGCATTGCCCGAACAAGGAGTTAGCCTACTCCGTACGACATGCGGTACTCCAAACTATGTAGCACCAGAGGTGCTCAATCACAAGGGTTATGATGGGGCTATGGCAGATGTTTGGTCCTGTGGGGATATCTTCCATTTGATGAGCTTGATCTCACCACGTTATATAATTGAGAGAGCCGAATTTTCATGTCCATCTTGGTTTCCTGTGGGGGCAAAAGCCTTGATCCATAGAATATTTGACCCCAATCCTTCAACTCGTATTACCATTGAGCAGATCAGAGAGGACGAGTGGTTCATGAAAAATTATGTTTCGGTCAAACATTTCGAAGATGAAGATGTAAATCTGGATGACGTAAATGCTGTCTTCGATGATCCTGAGGAACAAAGGACCGAAGAAGAACGTGGTAACGAGGACATGAGCCCGCTCGCCCTTAATGCATTTGATTTAATAATTCTATCTCAAGGCTTAAACCTCGGAACGATGTTCGACCGTGGCCAGGATACTATGAAGTACCCGACACGCTTCGTCTGCCAAAAGCCCGCAAAGATGAGAGTAGAAGGCCCATCAGCAAGCAAGACTTCTTATTTCTCAGTTATTATGGAAATTTTCGAAGTCGCTCCCACGTTCTTTATGGTGGACATTCAAAAAGCAGCTGGGGAAACCAGCGAGTACCTCAAGTTCTACAAGAGCTTTTATAGCAATCTTGAAGACATCATCTGGAAACCTTCAATCGACACCAGCAAACCAAGAACCGCCAAGAACAAGACTAAAAAACGCTGA 1227 43.85 MVVRKVGKYEVGRTIGEGTFAKVKFAQNTETGGSVAMKVLDRSTIIKHKMVEQIKKEISIMKLVRHPYVVLASRTKIYIILEYITGGELFDKIVHHGRLSEAESRRYFQQLIDGVDYCHSKGVYHRDLKPENLLLDSLGNLKISDFGLSALPEQGVSLLRTTCGTPNYVAPEVLNHKGYDGAMADVWSCGDIFHLMSLISPRYIIERAEFSCPSWFPVGAKALIHRIFDPNPSTRITIEQIREDEWFMKNYVSVKHFEDEDVNLDDVNAVFDDPEEQRTEEERGNEDMSPLALNAFDLIILSQGLNLGTMFDRGQDTMKYPTRFVCQKPAKMRVEGPSASKTSYFSVIMEIFEVAPTFFMVDIQKAAGETSEYLKFYKSFYSNLEDIIWKPSIDTSKPRTAKNKTKKR 408
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 866278 874151 + Cp4.1LG07g01430.1 Cpe07g00152 471959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00152 408 Gene3D Kinase associated domain 1, KA1 334 390 - -
Cpe07g00152 408 Gene3D Transferase(Phosphotransferase) domain 1 3 295 - -
Cpe07g00152 408 Gene3D Kinase associated domain 1, KA1 296 333 - -
Cpe07g00152 408 Pfam Protein kinase domain 9 247 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe07g00152 408 SUPERFAMILY Protein kinase-like (PK-like) 6 248 IPR011009 -
Cpe07g00152 408 CDD CIPK_C 294 386 - -
Cpe07g00152 408 ProSiteProfiles Protein kinase domain profile. 9 247 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe07g00152 408 Pfam NAF domain 290 331 IPR004041 GO:0007165
Cpe07g00152 408 ProSiteProfiles NAF domain profile. 288 312 IPR018451 GO:0007165
Cpe07g00152 408 PANTHER - 2 332 - -
Cpe07g00152 408 PANTHER - 331 405 - -
Cpe07g00152 408 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 2 332 - -
Cpe07g00152 408 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 331 405 - -
Cpe07g00152 408 SMART serkin_6 9 247 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe07g00152 408 ProSitePatterns Serine/Threonine protein kinases active-site signature. 123 135 IPR008271 GO:0004672|GO:0006468
Cpe07g00152 408 ProSitePatterns Protein kinases ATP-binding region signature. 15 47 IPR017441 GO:0005524
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00152 Cpe-Chr7:866278 Cpe18g00496 Cpe-Chr18:5756549 0 dispersed
Cpe11g00492 Cpe-Chr11:2848443 Cpe07g00152 Cpe-Chr7:866278 4.48E-20 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62491 PF00069 Pkinase 3.10E-57 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00152 - - csv:101222107 711.064