Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00159 ATGGATGCTGAGGTGCCTAAACCGAAGTCGAATTCCGTCGATAATAGTAAGAGGAAGGATTTTGAGGGTCCAATTGGCGATGGGGTTCGCGTGAAGAAGAAGACCTTGCAGGCTGTGTTGGAGCAGTGTCAGAGAGCTCTCGAATCGCTTAATGATTCCAACGGGCTCGATGAAAGCGAGGGGAATGATGGAGGTGAAGATGAAGATGATCGGCTCGGTGAGGGTTCGGAGTCTGTGCGAGGTGACCGAGAAGCCGACGAGTTGTGCGATCTTCTTAAATCTAAAGTTGAATGCCGCGACTTTCTTGAAAAGCTAGAGGATGCTCAAGCATTAGTTCCACAAAATACGTTAGAAGAATGTAGTTCTTGGGATGTGGTCAGTGATGTGGATCTATGGGAAAGTGGTGATGCTCTAGATCAAGATGGGTATGTTGTTGTGAAGCAAGAGGATATAGTAGATGCCCTTTGCAAAACATTCTCAGTGAAGAAGAGAAAAGGGAAACTCCGGAAGGCTTGGGATGGAAGCAAGGTCATTTATAATGTGGCATCCTGGGGAGCTACTGCAGTTGGGATATACCAGAACCCTGTGATTCTAAACGCTGCTTCGAAAGCATTCTGGACTTCGTGCCAAGTAATATCAAAGCTTCTCTAG 651 46.7 MDAEVPKPKSNSVDNSKRKDFEGPIGDGVRVKKKTLQAVLEQCQRALESLNDSNGLDESEGNDGGEDEDDRLGEGSESVRGDREADELCDLLKSKVECRDFLEKLEDAQALVPQNTLEECSSWDVVSDVDLWESGDALDQDGYVVVKQEDIVDALCKTFSVKKRKGKLRKAWDGSKVIYNVASWGATAVGIYQNPVILNAASKAFWTSCQVISKLL 216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 935415 939420 - Cp4.1LG07g01610.1 Cpe07g00159 471966

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00159 216 PANTHER RING FINGER PROTEIN 8 154 - -
Cpe07g00159 216 Coils Coil 33 53 - -
Cpe07g00159 216 MobiDBLite consensus disorder prediction 47 82 - -
Cpe07g00159 216 PANTHER RING FINGER PROTEIN 8 154 - -
Cpe07g00159 216 MobiDBLite consensus disorder prediction 1 27 - -
Cpe07g00159 216 PANTHER RING FINGER PROTEIN 153 216 - -
Cpe07g00159 216 PANTHER RING FINGER PROTEIN 153 216 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00159 - - - csv:101202793 329.331
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00159 Cpe-Chr7:935415 Cpe13g00611 Cpe-Chr13:5923248 1.79E-06 dispersed
Cpe11g00489 Cpe-Chr11:2834660 Cpe07g00159 Cpe-Chr7:935415 4.89E-119 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g491 . . . . . . . . . Cmo12g00146 . . . Car12g00171 . . Cpe07g00159 . . . . . . . . . . . . . . Cone4ag1304 . . . . . . . . . . . . . . Bma02g00107 . . . Cma12g00189 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004406 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 5 2 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe07g00159 Cpe_Chr07 FPKM 11.282934 12.441527 7.327354 6.117406 8.886806 8.335642 9.040498 8.926235 8.665376 9.449492