Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00160 ATGATGCGGGTCCCACTATTGTCAATTCCAATGGTAGTCCCTGAAACACAGGAACAAAAGCCAAACGACCACACCGGACAAACCTCCAAAAACAAAAGTCAGAAGACGGAAAATTACGGAAAAGCCCTTCTGCGCCTCTTTCCCTCCAACACGTTCTTGGAGAAGAGAAGGAGCGGGAATTGGGGTGACGATACGACGATGACTAACCGAAACGCCGAGCCTTTTCAGGGAGAATCCGACGATCCTCCGCCGCCGCCACCTCCTCCTCCGCAGGATCCTGCTGATGGTTCTTGTGCTGGAAACACGGTTTTCAAGAGTGGGCCACTTTTCCTATCATCAAAAGGGATTGGATGGACGTCCTGGAAAAAGAGATGGTTCATCCTAACACGTACTTCACTGGTTTTTTTTCGAAGTGATCCAAATGCTGTTCCTCAGAAAGGGGGTGAGGCGAATTTGACTCTCGGTGGCATTGATCTCAACAATTCAGGCAGTGTTGTTGTGAAAAGTGAAAAAAAACTCTTGACCGTGCTCTTTCCTGATGGTCGAGAAGGACGTGCATTCACACTCAAGGCTGAAACATTGGAGGACCTCTATGAGTGGAAAGCCGCACTGGAAAATGCTTTGGCACAGGCACCCAGTAGTGCCAATGCTAATGGTATCTTGAAGAATGATAAGATGGAACCAAATAATGGGTCTTCAGAGACGTTGAAAGATGGCCAACCACAACCTGGAAGACCCAGAGTCCTTGGTAGGCCAATTTTGCTTGCTTTGGAAGATGTTGATGGAACTCCCTCTTTTCTGGAGAAAGCCCTTAGGTTTATAGAAACCCATGGAGTCAAAGTAGAAGGCATTTTGCGACAAGCTGCAGATGTTGACGATGTTGAACATCGTTTGCGGGGATATGAGCAGGGAAAAAACGAGTTTTCTCCCGAAGAAGATGCACATGTAGTGGGTGACTGCGTGAAGTATGTCATCCGGGAGTTACCATCATCTCCAGTTCCAGCATCTTGCTGTAACGCTTTACTAGAAGCAAGCAAAACTGAACGAGGTGGCAGAGTCAATGCTATGCGATCTGCAATATACGAAACCTTTCCAGAACCAAATCGCCGTTTACTGCAGAGAATTCTTATGATGATGCAAACTGTGGCTTCTCATAAAGCTGAGAATCGAATGAGCTCTTCAGCTGTGGCAGCTTGCATGGCCCCCTTACTCCTTCGTCCTCTTTTAGCTGGTGATTGTGAAATTGAAACTGATTTTGACGTGGGGGGTGATGGTTCCATTCAACTTCTTCGTGCAGCTGCCGCAGCAAACCATGCTCAAGCCATAGTTATTACTCTACTGGAGGAGTATGACAAAATTTTTGGGGAAGGTTCTATGTCCCCTATATTATACTCTGATTCAGAAGAGAGTGGAAGTGAGAGCGAGGAGGCAAGTGATGATGATATGTCTTATGATGATGAAGAACAAGATGATGCTACTGGTTCTGATGTGGCAACAGACGATGAGCTTGAATCAACTGGAACCTGTAGTGGGAGTGTCGGTTCTGAAGTATTGAGTACTAGTTCGAAGAATTCCGATATGTGTGATGTAAATGGAATGAAGCCAAAGTCATCAAAGGAGAGAATCCATGACAAAACTGATCGAGGTAGAGGTAGTTCACCAATTAAGGATGAGAAGTCCTGTGAAGTTGAATGTGCATCCGAAAGCTTTGAAGGTTCTCCAACTACATCTAATAAAGGTTCCAACACGACAAAGCGTCTCACCATTTGGGGACGCACGCCTGCAAAGAAGAAACTCTCCTTGGAATCCATTGATTATGATTTTGGCGAAGAGGTTGAGATTCAGAGACTCGAGGCCACTAAATGTGAACTGCAAAATAAAATCGTGGAGGCGGCGCGAGAAAATGCGGTTCTCCAATCCAGTTTGGAAAACCGAAAGAAGATCTTGCAAGAGCGTCGTCTAACTCTTGAGCAAGAAGTAGCAAGACTAAGAGAACAGTTGCAAAGGGAGAAAGATCCCTCAGCTAATGTTAGTGAAAAGACAAAGGCAGATCTTGGAGAAAGCAATCGAGGCGAGAAAGACACTGCCAATATAAACAACACGATGGATGAATTTGTAGGACTGCTTAATAGGATACGTGATCAGAAAAGTAACCTACCTGATTTACGTAATGTCTCCCAACAAATGCAGAATCATCAAACAAAATTGAAGGACAAGAGGAAGGATGCTGGAAGTTTAGTCCCTCCTGAACACTCCAGAAATAAGGATGTTCTTTCCGGTCATGCAGAAATAAGTAAACATTCCCCTCTACACCAGCATCTAGATCCTCATAATCCCAGTGCCAAAATAGGTGTATTGGCAACCAATTTCGCAACGGGTCTAACCAATCCTAAGAGGGCTGGTGCGAGGATGGAGCTGGGACCAAATCACAATTCTTCAGCACTGACGAAACTGACGACCAGACTCAACTTCTTGAAGGAGCGTCGCAGCCAGATAGCAAATGAACTCCAGAATATGGACCGGGGACGAGTTTCGGGCCAATCAATCGACGGTTCTGAAAAGGGCAGGGGAGTTGAAGCTCAGCGCTCAGTCCAAAACTCAGATGACACTAAAGGATCTGCTGACAATCTCCAATCCATTCAGGACTCCGATAAGCGAGCAGGAAGCCAAGGCAACCAGCCCCAAAAATCAGATGCCAGATAA 2703 45.8 MMRVPLLSIPMVVPETQEQKPNDHTGQTSKNKSQKTENYGKALLRLFPSNTFLEKRRSGNWGDDTTMTNRNAEPFQGESDDPPPPPPPPPQDPADGSCAGNTVFKSGPLFLSSKGIGWTSWKKRWFILTRTSLVFFRSDPNAVPQKGGEANLTLGGIDLNNSGSVVVKSEKKLLTVLFPDGREGRAFTLKAETLEDLYEWKAALENALAQAPSSANANGILKNDKMEPNNGSSETLKDGQPQPGRPRVLGRPILLALEDVDGTPSFLEKALRFIETHGVKVEGILRQAADVDDVEHRLRGYEQGKNEFSPEEDAHVVGDCVKYVIRELPSSPVPASCCNALLEASKTERGGRVNAMRSAIYETFPEPNRRLLQRILMMMQTVASHKAENRMSSSAVAACMAPLLLRPLLAGDCEIETDFDVGGDGSIQLLRAAAAANHAQAIVITLLEEYDKIFGEGSMSPILYSDSEESGSESEEASDDDMSYDDEEQDDATGSDVATDDELESTGTCSGSVGSEVLSTSSKNSDMCDVNGMKPKSSKERIHDKTDRGRGSSPIKDEKSCEVECASESFEGSPTTSNKGSNTTKRLTIWGRTPAKKKLSLESIDYDFGEEVEIQRLEATKCELQNKIVEAARENAVLQSSLENRKKILQERRLTLEQEVARLREQLQREKDPSANVSEKTKADLGESNRGEKDTANINNTMDEFVGLLNRIRDQKSNLPDLRNVSQQMQNHQTKLKDKRKDAGSLVPPEHSRNKDVLSGHAEISKHSPLHQHLDPHNPSAKIGVLATNFATGLTNPKRAGARMELGPNHNSSALTKLTTRLNFLKERRSQIANELQNMDRGRVSGQSIDGSEKGRGVEAQRSVQNSDDTKGSADNLQSIQDSDKRAGSQGNQPQKSDAR 900
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 940623 961005 + Cp4.1LG07g01570.1 Cpe07g00160 471967

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00160 900 MobiDBLite consensus disorder prediction 218 247 - -
Cpe07g00160 900 Gene3D Rho GTPase activation protein 234 455 IPR008936 GO:0007165
Cpe07g00160 900 CDD PH 105 204 - -
Cpe07g00160 900 MobiDBLite consensus disorder prediction 723 758 - -
Cpe07g00160 900 MobiDBLite consensus disorder prediction 666 698 - -
Cpe07g00160 900 PANTHER RHO GTPASE-ACTIVATING PROTEIN 7 65 845 - -
Cpe07g00160 900 SMART RhoGAP_3 261 451 IPR000198 GO:0007165
Cpe07g00160 900 MobiDBLite consensus disorder prediction 18 38 - -
Cpe07g00160 900 MobiDBLite consensus disorder prediction 78 94 - -
Cpe07g00160 900 MobiDBLite consensus disorder prediction 833 900 - -
Cpe07g00160 900 Coils Coil 815 835 - -
Cpe07g00160 900 ProSiteProfiles Rho GTPase-activating proteins domain profile. 255 454 IPR000198 GO:0007165
Cpe07g00160 900 PANTHER RHO GTPASE-ACTIVATING PROTEIN REN1 65 845 - -
Cpe07g00160 900 MobiDBLite consensus disorder prediction 1 100 - -
Cpe07g00160 900 MobiDBLite consensus disorder prediction 469 498 - -
Cpe07g00160 900 MobiDBLite consensus disorder prediction 733 758 - -
Cpe07g00160 900 CDD RhoGAP 264 402 - -
Cpe07g00160 900 Pfam RhoGAP domain 264 407 IPR000198 GO:0007165
Cpe07g00160 900 Coils Coil 722 742 - -
Cpe07g00160 900 SMART PH_update 103 211 IPR001849 -
Cpe07g00160 900 MobiDBLite consensus disorder prediction 461 560 - -
Cpe07g00160 900 Gene3D - 94 210 IPR011993 -
Cpe07g00160 900 MobiDBLite consensus disorder prediction 666 691 - -
Cpe07g00160 900 Coils Coil 639 666 - -
Cpe07g00160 900 MobiDBLite consensus disorder prediction 499 528 - -
Cpe07g00160 900 Pfam PH domain 104 208 IPR001849 -
Cpe07g00160 900 MobiDBLite consensus disorder prediction 218 239 - -
Cpe07g00160 900 SUPERFAMILY GTPase activation domain, GAP 263 456 IPR008936 GO:0007165
Cpe07g00160 900 MobiDBLite consensus disorder prediction 859 900 - -
Cpe07g00160 900 ProSiteProfiles PH domain profile. 102 209 IPR001849 -
Cpe07g00160 900 SUPERFAMILY PH domain-like 80 209 - -
Cpe07g00160 900 MobiDBLite consensus disorder prediction 533 560 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00160 - - - cmax:111495950 1554.27
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00886 Cpe-Chr4:8110464 Cpe07g00160 Cpe-Chr7:940623 0 dispersed
Cpe07g00160 Cpe-Chr7:940623 Cpe18g00197 Cpe-Chr18:3651587 5.63E-53 dispersed
Cpe11g00488 Cpe-Chr11:2817224 Cpe07g00160 Cpe-Chr7:940623 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g493 . . . . . . . . . Cmo12g00147 . . . Car12g00172 . . Cpe07g00160 . . . . . . . . . . . . . . Cone4ag1303 . . . . . . . . . . . Bpe02g01158 . . . . . . Cma12g00190 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003403 0 1 1 0 1 1 2 1 2 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 12 4 1 47
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe07g00160 Cpe_Chr07 FPKM 3.408304 0.0 1.992031 2.414955 2.548322 2.485204 3.651248 3.289709 3.438049 3.914709