Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00167 ATGGCGAGGGAGAAAATCAAGATTAAGAAGATCAGCAACTTAACGGCGAGGCAAGTGACGTTTTCGAAGCGACGGCGAGGGCTTTTCAAGAAGGCGGAGGAGTTGTCGGTGCTCTGCGACGCCGAGGTGGCGCTGCTCGTCTTCTCCGCTACCGGAAAGCTCTTCGAGTTTTCCAGTTCCAGCGTTAAGGATGTTATTACAAGATACAATTTGCACTCCAGCAACCTTGGAGAGTTGGAAGATCCATCCCTTGACCTACAGCTCGAGAATAGCAGCCACGCTCGGTTGACCAAGGAAGTTGCAGATATGAGCCATCAACTGAGGCATATGAGAGGAGAGGATCTTCAAGGATTGAATTTAGAAGATTTGAAGCAATTGGAAGGAGTGCTTGAAGTAGGCCTCGATCGTGTTCTTCAAACTAAGGAAAGGAAGATTATGAATGAAATTAATGCGCTTGAGCTTAAGGGAGCCAGATTGATGGAAGAGAATAGGACGCTGAATCGGCAGATGATAAGGTTGTCGAATCAAAGAAGGCCACTGCTGGTAGTTTCCGACGTTCCGGTGCCGGAAGAAGGGGTTTCGTCGGACTCCGCCGCCAATGTGTACAGCTGCAACAGCGGCCCTCCCGCCGACGACGACAGCTCCGATACATCTCTCAAATTAGGGCTTGCATGCCCAAATTGA 684 49.85 MAREKIKIKKISNLTARQVTFSKRRRGLFKKAEELSVLCDAEVALLVFSATGKLFEFSSSSVKDVITRYNLHSSNLGELEDPSLDLQLENSSHARLTKEVADMSHQLRHMRGEDLQGLNLEDLKQLEGVLEVGLDRVLQTKERKIMNEINALELKGARLMEENRTLNRQMIRLSNQRRPLLVVSDVPVPEEGVSSDSAANVYSCNSGPPADDDSSDTSLKLGLACPN 227
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 992248 996230 + Cp4.1LG07g01680.1 Cpe07g00167 471974
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00167 227 Coils Coil 149 176 - -
Cpe07g00167 227 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cpe07g00167 227 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cpe07g00167 227 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cpe07g00167 227 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cpe07g00167 227 MobiDBLite consensus disorder prediction 196 213 - -
Cpe07g00167 227 Pfam K-box region 92 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cpe07g00167 227 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Cpe07g00167 227 SUPERFAMILY SRF-like 3 72 IPR036879 GO:0003677|GO:0046983
Cpe07g00167 227 PANTHER MADS-BOX PROTEIN AGL24-LIKE ISOFORM X1 1 221 - -
Cpe07g00167 227 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Cpe07g00167 227 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cpe07g00167 227 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 221 - -
Cpe07g00167 227 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cpe07g00167 227 MobiDBLite consensus disorder prediction 190 227 - -
Cpe07g00167 227 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Cpe07g00167 227 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00167 Cpe-Chr7:992248 Cpe19g00176 Cpe-Chr19:1423294 3.64E-59 dispersed
Cpe10g00528 Cpe-Chr10:3096610 Cpe07g00167 Cpe-Chr7:992248 1.29E-35 wgd
Cpe10g00536 Cpe-Chr10:3143335 Cpe07g00167 Cpe-Chr7:992248 3.25E-86 wgd
Cpe19g00738 Cpe-Chr19:5703594 Cpe07g00167 Cpe-Chr7:992248 1.42E-21 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49713 PF01486 K-box 1.80E-15 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00167 - - csv:101213234 340.887