Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00168 ATGAACGACGCCTCTGTCAAAGGCCTCGAAGTCTTCGATTTCACCGAAGAAGACGAGCTTCCTGAATTGATCTCCGAGAAGTGTCTCAGCAAATTCAAAAACCCTAATCTCGAAACTAACTCTGTTTTGAAGTATGGATGTCTTGAATTAGGTAGTGTCCAATGTGTTGAAGGGAAAGAGGTTGAAAATCGACATATGGATGTTGACTTGGATGAATGTAATCGTGGTTGTGACAATGGTATTTCACATATCCCCTCGGGCATATCTAAAGAGCAATTGATCATGGAAGAAGAGAAATATCAGTTGGATGTCAATACAGAATCAGAATGGAATACTCATTCACAAGACATGTTTGTGGAAGTAAATAATCACGTGACAGGATGCTTTGGCTCTGAACTTGGAAAAGTTGGATCTAGCTCTCAAAGTTCTATCCTGGGGTTAAATTGCACTCTTCCTGAGTTTGCCGCTAAAAGGGAGCAAGTGGATGCACTTTCATATCCTAATGGAAGCATGAATGGGAGTTCTCCAATGAGCTCTCCTTCGGAGCTTGTAGAGGATAGTGTTTCGCCGAATGGGAAGTCTTCAGATAAATGCTCATCTGACAATGAAATGGATGATCTTAACCAAGAGGTTGTTCTATGTCCTGATTATATTATATATGGAGATTCTTACTGTACCAGTTCGCAGTTAACCTTTTCACATAATGGCGTCAAAATTAATGGTTTTTCTGATTATGGAAGCAACGAGTTCCTTAACCTTGAATGGAGAGTTGATGATCTCATTAATATTGAGTGTCATTGGTTTCAAAGGGTTGAATTTGTGACTATTAAGCTCCATACTATATCAAAGGATGTTGGTCAACGTGATAATGCATGTGACACTTCTGGCCTTAAGGAAGTGAAGATTGTTCTGGTTGATCCTTGCTGGTCTGAGAAACAACAAAAAATCAGATCTTTGGATTCCAGATACATGGCTATTTGGAATATGTCTCTTGACTTTGATGAGCATTTTGAAGAAGTTGTCTATCCCAAAGGAGATCCAGATGCCGTTTCCATTAGTAAGAGGGATGTTGACTTGTTGCAACCAGAGACATTTGTCAATGATACAATCATTGACTTTTACATCCAGTATTTGAAGAGCCAGATAGACCCTAAGGAGAAACATAGATTTCACTTCTTCAATAGCTTTTTCTTTAGGAAGCTAGCTGACCTTGATAAAGATCCCTCAAGTGCTTCTGATGGCAAAGCTGCTTTTCTTCGTGTTCGAAAATGGACTCGGAAAGTGAATTTATTTGACAAGGATTATATCTTCATTCCTATAAACTTCAACCTTCATTGGAGCTTAATGGTCATATGCCATCCTGGTGAAGTGGCTAGATATAGCGATGAAAACCTGATGAAGTCAACAAAAGTACCGTGTATATTGCATATGGATTCTATTAAGGGAAGTCACGCAGGCCTTAAAAATCTCATTCAAAGTTATTTGCTGGAAGAATGGAACGAAAGAAACAAGGATGCATCTGAAGATATTTCATCAAAGTTTAAGAACCTTCGGTTTCTCCCACTCGAGCTTCCGCAGCAGGAAAATTCATTTGATTGCGGATTATTTTTGCTCCACTATCTAGAACTCTTTTTGGCAGAAGCTCCCCTTGATTTCAGTCCGTTCAAAATCTCCAAGCTTTCAAAATTTCTTAATGTGGATTGGTTCCCACCTGCTGAAGCTTACCTCAAGCGAACTTTAATACAGAGATTAATTTTTGAAATCCTTGAAAAACGATCTCGAGAAATGTCCACCACTGCTTGCAGTGATGATCTCCTTTCTAAATTTCCATCAAATAATGAGGATGAAGCTGGTGTGGAGCTTGTTCCGGAAAGTGGAAGACTGGCAGAGACATTCAATCACAATTTGTCAGGCTCACAAGCTGCTGATGGGATTGAAATTACTCTGTTATCTGAATCTTCGAGTAGACATAACCACTTTATCGACGGTTCTGGCTTGGTTGTCAGAGAACTATTTGAACCAGGCGCATCAAATGGATCATTACTTGGACACTATCAATCTTTTGCCCAGACATCATCGTATTTTGATGCAAATGTTACCGTGCTGGAGGAAGATGCAGATACGGAAACTGGAGACCGTTTCATGTACTTGCCTTCAGAACAGGATGGTTTGCAGCCAGTCGATGCAATGACATCTCAAGCTTGTCGTTTTCCGGGTTCGTCAAGAGGCCTAGAATCCGAGACTGCTTTTGACTTGTGCATGTCTATTCAACCAGAGCATGGTAGTGGCATTGCCTCATCCCCCTCAAGTCACTCAGATGTCTTAGAAGATGTGGGAATCATTGAAAGTTGCCATGTTAGGGAACCAAGCCCTGGTAACAAAGAAGAAATTAACAGAAAAAGGCCCTTACCAATTGAGAACCTGGAACCTATAGCAGAATGCCCTACTTCTGCTGCTACCACGACGCAAGATACCGACACCATTGTCGTTTCTAAAGATACTTGTGAAGACATGGAAAATGATGGTTCTGATCCCCATTGTAAAGAAACTGTCGTTGCATCACCGTGTCTAGATGAGGATATAACAACCAAAACAGACATCGAACATGATGATGCAGTGGTGGATGCTTCGGTTACTGAGGTCGACTTACACGAGCAACCTCCTGCCAAGAAACCGAGGCATTTTCCATACCCCGAAGAAGCAAGCAACGGTCTCGGAGACATTCTGCTAGAGGATGCAGACTTATAA 2748 41.05 MNDASVKGLEVFDFTEEDELPELISEKCLSKFKNPNLETNSVLKYGCLELGSVQCVEGKEVENRHMDVDLDECNRGCDNGISHIPSGISKEQLIMEEEKYQLDVNTESEWNTHSQDMFVEVNNHVTGCFGSELGKVGSSSQSSILGLNCTLPEFAAKREQVDALSYPNGSMNGSSPMSSPSELVEDSVSPNGKSSDKCSSDNEMDDLNQEVVLCPDYIIYGDSYCTSSQLTFSHNGVKINGFSDYGSNEFLNLEWRVDDLINIECHWFQRVEFVTIKLHTISKDVGQRDNACDTSGLKEVKIVLVDPCWSEKQQKIRSLDSRYMAIWNMSLDFDEHFEEVVYPKGDPDAVSISKRDVDLLQPETFVNDTIIDFYIQYLKSQIDPKEKHRFHFFNSFFFRKLADLDKDPSSASDGKAAFLRVRKWTRKVNLFDKDYIFIPINFNLHWSLMVICHPGEVARYSDENLMKSTKVPCILHMDSIKGSHAGLKNLIQSYLLEEWNERNKDASEDISSKFKNLRFLPLELPQQENSFDCGLFLLHYLELFLAEAPLDFSPFKISKLSKFLNVDWFPPAEAYLKRTLIQRLIFEILEKRSREMSTTACSDDLLSKFPSNNEDEAGVELVPESGRLAETFNHNLSGSQAADGIEITLLSESSSRHNHFIDGSGLVVRELFEPGASNGSLLGHYQSFAQTSSYFDANVTVLEEDADTETGDRFMYLPSEQDGLQPVDAMTSQACRFPGSSRGLESETAFDLCMSIQPEHGSGIASSPSSHSDVLEDVGIIESCHVREPSPGNKEEINRKRPLPIENLEPIAECPTSAATTTQDTDTIVVSKDTCEDMENDGSDPHCKETVVASPCLDEDITTKTDIEHDDAVVDASVTEVDLHEQPPAKKPRHFPYPEEASNGLGDILLEDADL 915
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 996922 1005844 + Cp4.1LG07g01690.1 Cpe07g00168 471975

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00168 915 PANTHER UBIQUITIN-LIKE-SPECIFIC PROTEASE 2B-RELATED 8 894 - -
Cpe07g00168 915 MobiDBLite consensus disorder prediction 879 915 - -
Cpe07g00168 915 ProSiteProfiles Ubiquitin-like protease family profile. 350 544 IPR003653 GO:0006508|GO:0008234
Cpe07g00168 915 Gene3D - 342 586 - -
Cpe07g00168 915 MobiDBLite consensus disorder prediction 879 897 - -
Cpe07g00168 915 PANTHER UBIQUITIN-LIKE-SPECIFIC PROTEASE 2B-RELATED 8 894 - -
Cpe07g00168 915 MobiDBLite consensus disorder prediction 165 197 - -
Cpe07g00168 915 MobiDBLite consensus disorder prediction 165 202 - -
Cpe07g00168 915 Pfam Ulp1 protease family, C-terminal catalytic domain 365 554 IPR003653 GO:0006508|GO:0008234
Cpe07g00168 915 Gene3D - 390 521 - -
Cpe07g00168 915 SUPERFAMILY Cysteine proteinases 342 586 IPR038765 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00168 K08596 SENP7; sentrin-specific protease 7 [EC:3.4.22.68] - csv:101206097 1328.15
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01527 Cpe-Chr1:9146961 Cpe07g00168 Cpe-Chr7:996922 1.15E-28 dispersed
Cpe07g00168 Cpe-Chr7:996922 Cpe09g00501 Cpe-Chr9:3323901 1.54E-38 dispersed
Cpe09g00983 Cpe-Chr9:8719188 Cpe07g00168 Cpe-Chr7:996922 2.51E-16 transposed
Cpe11g00480 Cpe-Chr11:2760714 Cpe07g00168 Cpe-Chr7:996922 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g511 . . . . . . . . . Cmo12g00152 . . . Car12g00180 . . Cpe07g00168 . . . . . . . . . . . . . . . . . . . . . . . . . Bda13g01358 Bpe02g01149 . . Bma02g00113 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001964 1 5 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 4 2 2 2 2 2 2 2 2 1 3 5 1 65
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe07g00168 Cpe_Chr07 FPKM 4.437069 5.248514 4.076886 3.306948 6.865759 6.359769 7.354801 0.519116 0.320446 0.384937