Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00169 ATGGTTCATGCTGGTTCTACCCAATTTTCACATAAACTGGGGATTCAAAGCGTTCATGGATGCAATAAGTTACATATTAGTGGCAAGGGAAAGACCCGTCTACATCTTGTTACTATCATTCCTACGTCACACGATCTGAGGTATGATCCTGGACGTCTTCAGCTCTTACGCAGTGCAAGTCGGCCAGTGTATCCCATGTCTTCCAGAGCAAATGTTTTGGTGTGTCGATCTGTTCTTGAACCAAGTGGTGGAGGAGCTGGGACTGCTGTTCTAAAAACTTCAGCCTTGGTGCTGACAAGATCTTATGATGCTTTACGCGGCAGTCCTCTGTTACTTAAATTAATTCCAGCAGCTTGTGTCATTGCTTTTGCTGCTTGGGGTGTTGGACCTCTTATGCGTTTGGGGAGGGTTCTATTTCTTCATGAGCCAGATGGCAGTTGGAAGAAAAGTAATGCATACTATGTTACGACTTCCTATGTTCAGCCTTTACTGCTATGGACTGGAGCTACATTGATCTGCAGGGCATTGGATCCAGTAGTTTTACCGTCAGTAGCCAGTCAGGCCATCAAACAGCGACTTCTAAATTTTGTTCAAGCTTTGTCTACTGTTCTGGCATTTGCCTATTGTATATCAAGCTTGATTCAACAAGTACAAAAATTCGCTACGGAATCAAACGACTCAAGTGATGCTAGAAATATGGGCTTTGATTTTGCTGGGAAAGCTGTTTACACTGCAGTCTGGATTGCTGCTCTTTCATTGTTCATGGAGTTGCTAGGTTTTTCTACCCAAAAGTGGCTCACAGCTGGGGGTCTTGGTACCGTATTACTTACCCTTGCTGGTCGTGAGATATTTACTAACTTTCTCTCAAGTGTAATGATTCATGCAACACGACCATTTGTGGTAAATGAATGGATTCAGACAAAGATTGATGGATATGAAGTTTCTGGAACGGTTGAGCACGTTGGTTGGTGGTCGCCGACTATTATCCGAGGCGATGATCGTGAAGCAGTTCATATTCCAAATCACAAATTCACCGTTAGTATTGTGAGAAATCTTACTCAGAAGACTCATTGGCGTATCAAAACTCATATTGCCATCAGCCACTTAGATGTCAATAAGATTAATGTGAGAGTCAATATTAGTTTATCTTTGGCACCTGTCTACCTTAGGTTCTTTTCATTGTATGTTGTCCAACAAGAGCTTGGTTTCAATGTCCAGTATATTGTAGCTGATATGCGGAAAGTTTTGTCCAAGAATCCTCAAGTTGAACAGCAAAGGTTACACCGTAGAATCTTTTTGGACAACATCAATCCTGAAAACCAGGCTCTTATGGAGGCAATTCTCTTGGACCTTCTCAGGGTTATCAGCCACCATAGGGCCCGGCTTGCCACTCCCATACGCACTGTTCAGAAAATATATGGTGAGGCTGACTTGGAGAATGTACCATTTTCTGAGACCATGTATTCTCGTACAGGGGCTACTAACCGCCCTCTGCTTCTTATTGAGCCATCTTATAAAGTCAATGGTGACGATAAAGCCAAAGTCTCTGGACGTCCCGCTCGCTCGTCAAGCGAAGAAAAAGATGCCAAACAAGAGGCAGTCTCAACATCAGGAACGAAAGCCCCCGACACATCCGGAACATCACCTAAGCCTTCAACTGGATCAGTATCCAACACACAGACCCAGAATCCAACCAGTACTCCAGAACAAAGCAGCATTGAGAAGCCAGTAACAAGCAATGAGGTAAAAGGAGAAAAGAAAGAGCTCTCAGGACTGAACGCTAAGGATAATACGCCACGAGGGACTCCTCCCAAATGGTCGCCCTCAGCTGCCGGTCCGAGTAGCGAGAAAGCTGATATTTCTTCCTCGAGCGTGCAGAATAAGCAAGATGGTGAGAAGACCCCTGTGGGCAGACCTCCATTGGAGGAGAACATTGTCCTGGGAGTTGCCTTGGAAGGCTCCAAAAGAACTCTTCCAATAGAGGAAGATCTGAATCCATCTCCCTTTCACTCTCCAGCTGATACAAAAGAAATTTCGACACAGAGGAATGGGAGTGAGTTTGGTCCAAAGAGCAAGGATATGAAAGATGGGCAGATGCCTGCAGTCCCAGGTGGTACAAAAAGTGATTGA 2130 44.65 MVHAGSTQFSHKLGIQSVHGCNKLHISGKGKTRLHLVTIIPTSHDLRYDPGRLQLLRSASRPVYPMSSRANVLVCRSVLEPSGGGAGTAVLKTSALVLTRSYDALRGSPLLLKLIPAACVIAFAAWGVGPLMRLGRVLFLHEPDGSWKKSNAYYVTTSYVQPLLLWTGATLICRALDPVVLPSVASQAIKQRLLNFVQALSTVLAFAYCISSLIQQVQKFATESNDSSDARNMGFDFAGKAVYTAVWIAALSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATRPFVVNEWIQTKIDGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVSIVRNLTQKTHWRIKTHIAISHLDVNKINVRVNISLSLAPVYLRFFSLYVVQQELGFNVQYIVADMRKVLSKNPQVEQQRLHRRIFLDNINPENQALMEAILLDLLRVISHHRARLATPIRTVQKIYGEADLENVPFSETMYSRTGATNRPLLLIEPSYKVNGDDKAKVSGRPARSSSEEKDAKQEAVSTSGTKAPDTSGTSPKPSTGSVSNTQTQNPTSTPEQSSIEKPVTSNEVKGEKKELSGLNAKDNTPRGTPPKWSPSAAGPSSEKADISSSSVQNKQDGEKTPVGRPPLEENIVLGVALEGSKRTLPIEEDLNPSPFHSPADTKEISTQRNGSEFGPKSKDMKDGQMPAVPGGTKSD 709
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1006208 1012140 - Cp4.1LG07g01780.1 Cpe07g00169 471976

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00169 709 Gene3D - 299 354 IPR023408 -
Cpe07g00169 709 Gene3D - 163 297 - -
Cpe07g00169 709 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 2, CHLOROPLASTIC 1 376 - -
Cpe07g00169 709 MobiDBLite consensus disorder prediction 508 533 - -
Cpe07g00169 709 MobiDBLite consensus disorder prediction 614 631 - -
Cpe07g00169 709 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 2, CHLOROPLASTIC 404 701 - -
Cpe07g00169 709 MobiDBLite consensus disorder prediction 534 578 - -
Cpe07g00169 709 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 404 701 IPR045042 -
Cpe07g00169 709 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 1 376 IPR045042 -
Cpe07g00169 709 MobiDBLite consensus disorder prediction 508 709 - -
Cpe07g00169 709 SUPERFAMILY Sm-like ribonucleoproteins 283 353 IPR010920 -
Cpe07g00169 709 Pfam Mechanosensitive ion channel 240 368 IPR006685 GO:0016020|GO:0055085
Cpe07g00169 709 MobiDBLite consensus disorder prediction 579 593 - -
Cpe07g00169 709 MobiDBLite consensus disorder prediction 672 687 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00169 K22047 MSL1_2_3; mechanosensitive ion channel protein 1/2/3 - csv:101213477 1096.65
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00169 Cpe-Chr7:1006208 Cpe14g00646 Cpe-Chr14:4178988 0 dispersed
Cpe11g00479 Cpe-Chr11:2754517 Cpe07g00169 Cpe-Chr7:1006208 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g513 . . . . . . . . . Cmo12g00153 . . . . . . Cpe07g00169 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma12g00199 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe07g00725 . 149 501 Mechanosensitive Ion Channel Family AT4G00290 63.0 5.1e-133 471.9
Cpe14g00646 . 64 727 Mechanosensitive Ion Channel Family AT5G10490 59.8 4.0e-197 685.3
Cpe11g00479 . 10 701 Mechanosensitive Ion Channel Family AT5G10490 55.4 8.9e-189 657.5
Cpe07g00169 . 61 698 Mechanosensitive Ion Channel Family AT5G10490 52.9 1.8e-173 606.7
Cpe11g00479 . 10 681 Mechanosensitive Ion Channel Family AT1G58200 57.0 1.6e-198 689.9
Cpe14g00646 . 6 696 Mechanosensitive Ion Channel Family AT1G58200 52.2 1.2e-177 620.5
Cpe07g00169 . 10 514 Mechanosensitive Ion Channel Family AT1G58200 59.8 1.4e-170 597.0
Cpe16g00335 . 50 938 Mechanosensitive Ion Channel Family AT1G53470 56.0 1.1e-263 906.7
Cpe16g00335 . 50 933 Mechanosensitive Ion Channel Family AT3G14810 52.5 1.5e-246 849.7
Cpe16g00335 . 50 938 Mechanosensitive Ion Channel Family AT1G78610 58.7 9.3e-284 973.4
Cpe04g00610 . 65 911 Mechanosensitive Ion Channel Family AT1G78610 51.3 1.5e-225 780.0
Cpe16g00335 . 229 933 Mechanosensitive Ion Channel Family AT2G17000 59.6 1.1e-233 807.0
Cpe04g00610 . 270 905 Mechanosensitive Ion Channel Family AT2G17000 56.0 2.0e-193 673.3
Cpe02g00286 . 69 720 Mechanosensitive Ion Channel Family AT5G19520 50.7 1.4e-174 610.5
Cpe18g00332 . 58 753 Mechanosensitive Ion Channel Family AT5G12080 54.2 3.1e-203 705.7
Cpe02g00286 . 64 720 Mechanosensitive Ion Channel Family AT5G12080 54.3 3.7e-188 655.6
Cpe04g01033 . 104 797 Mechanosensitive Ion Channel Family AT5G12080 51.0 4.2e-184 642.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001552 2 6 1 1 1 2 3 2 2 2 2 2 3 2 2 3 2 3 3 2 2 2 2 3 2 2 2 6 2 2 71
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe07g00169 Cpe_Chr07 FPKM 6.350691 5.814749 4.557996 5.994804 4.836643 6.420851 6.258626 6.25391 7.221766 7.879226