Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00169 ATGGTTCATGCTGGTTCTACCCAATTTTCACATAAACTGGGGATTCAAAGCGTTCATGGATGCAATAAGTTACATATTAGTGGCAAGGGAAAGACCCGTCTACATCTTGTTACTATCATTCCTACGTCACACGATCTGAGGTATGATCCTGGACGTCTTCAGCTCTTACGCAGTGCAAGTCGGCCAGTGTATCCCATGTCTTCCAGAGCAAATGTTTTGGTGTGTCGATCTGTTCTTGAACCAAGTGGTGGAGGAGCTGGGACTGCTGTTCTAAAAACTTCAGCCTTGGTGCTGACAAGATCTTATGATGCTTTACGCGGCAGTCCTCTGTTACTTAAATTAATTCCAGCAGCTTGTGTCATTGCTTTTGCTGCTTGGGGTGTTGGACCTCTTATGCGTTTGGGGAGGGTTCTATTTCTTCATGAGCCAGATGGCAGTTGGAAGAAAAGTAATGCATACTATGTTACGACTTCCTATGTTCAGCCTTTACTGCTATGGACTGGAGCTACATTGATCTGCAGGGCATTGGATCCAGTAGTTTTACCGTCAGTAGCCAGTCAGGCCATCAAACAGCGACTTCTAAATTTTGTTCAAGCTTTGTCTACTGTTCTGGCATTTGCCTATTGTATATCAAGCTTGATTCAACAAGTACAAAAATTCGCTACGGAATCAAACGACTCAAGTGATGCTAGAAATATGGGCTTTGATTTTGCTGGGAAAGCTGTTTACACTGCAGTCTGGATTGCTGCTCTTTCATTGTTCATGGAGTTGCTAGGTTTTTCTACCCAAAAGTGGCTCACAGCTGGGGGTCTTGGTACCGTATTACTTACCCTTGCTGGTCGTGAGATATTTACTAACTTTCTCTCAAGTGTAATGATTCATGCAACACGACCATTTGTGGTAAATGAATGGATTCAGACAAAGATTGATGGATATGAAGTTTCTGGAACGGTTGAGCACGTTGGTTGGTGGTCGCCGACTATTATCCGAGGCGATGATCGTGAAGCAGTTCATATTCCAAATCACAAATTCACCGTTAGTATTGTGAGAAATCTTACTCAGAAGACTCATTGGCGTATCAAAACTCATATTGCCATCAGCCACTTAGATGTCAATAAGATTAATGTGAGAGTCAATATTAGTTTATCTTTGGCACCTGTCTACCTTAGGTTCTTTTCATTGTATGTTGTCCAACAAGAGCTTGGTTTCAATGTCCAGTATATTGTAGCTGATATGCGGAAAGTTTTGTCCAAGAATCCTCAAGTTGAACAGCAAAGGTTACACCGTAGAATCTTTTTGGACAACATCAATCCTGAAAACCAGGCTCTTATGGAGGCAATTCTCTTGGACCTTCTCAGGGTTATCAGCCACCATAGGGCCCGGCTTGCCACTCCCATACGCACTGTTCAGAAAATATATGGTGAGGCTGACTTGGAGAATGTACCATTTTCTGAGACCATGTATTCTCGTACAGGGGCTACTAACCGCCCTCTGCTTCTTATTGAGCCATCTTATAAAGTCAATGGTGACGATAAAGCCAAAGTCTCTGGACGTCCCGCTCGCTCGTCAAGCGAAGAAAAAGATGCCAAACAAGAGGCAGTCTCAACATCAGGAACGAAAGCCCCCGACACATCCGGAACATCACCTAAGCCTTCAACTGGATCAGTATCCAACACACAGACCCAGAATCCAACCAGTACTCCAGAACAAAGCAGCATTGAGAAGCCAGTAACAAGCAATGAGGTAAAAGGAGAAAAGAAAGAGCTCTCAGGACTGAACGCTAAGGATAATACGCCACGAGGGACTCCTCCCAAATGGTCGCCCTCAGCTGCCGGTCCGAGTAGCGAGAAAGCTGATATTTCTTCCTCGAGCGTGCAGAATAAGCAAGATGGTGAGAAGACCCCTGTGGGCAGACCTCCATTGGAGGAGAACATTGTCCTGGGAGTTGCCTTGGAAGGCTCCAAAAGAACTCTTCCAATAGAGGAAGATCTGAATCCATCTCCCTTTCACTCTCCAGCTGATACAAAAGAAATTTCGACACAGAGGAATGGGAGTGAGTTTGGTCCAAAGAGCAAGGATATGAAAGATGGGCAGATGCCTGCAGTCCCAGGTGGTACAAAAAGTGATTGA 2130 44.65 MVHAGSTQFSHKLGIQSVHGCNKLHISGKGKTRLHLVTIIPTSHDLRYDPGRLQLLRSASRPVYPMSSRANVLVCRSVLEPSGGGAGTAVLKTSALVLTRSYDALRGSPLLLKLIPAACVIAFAAWGVGPLMRLGRVLFLHEPDGSWKKSNAYYVTTSYVQPLLLWTGATLICRALDPVVLPSVASQAIKQRLLNFVQALSTVLAFAYCISSLIQQVQKFATESNDSSDARNMGFDFAGKAVYTAVWIAALSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATRPFVVNEWIQTKIDGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVSIVRNLTQKTHWRIKTHIAISHLDVNKINVRVNISLSLAPVYLRFFSLYVVQQELGFNVQYIVADMRKVLSKNPQVEQQRLHRRIFLDNINPENQALMEAILLDLLRVISHHRARLATPIRTVQKIYGEADLENVPFSETMYSRTGATNRPLLLIEPSYKVNGDDKAKVSGRPARSSSEEKDAKQEAVSTSGTKAPDTSGTSPKPSTGSVSNTQTQNPTSTPEQSSIEKPVTSNEVKGEKKELSGLNAKDNTPRGTPPKWSPSAAGPSSEKADISSSSVQNKQDGEKTPVGRPPLEENIVLGVALEGSKRTLPIEEDLNPSPFHSPADTKEISTQRNGSEFGPKSKDMKDGQMPAVPGGTKSD 709
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1006208 1012140 - Cp4.1LG07g01780.1 Cpe07g00169 471976
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00169 709 Gene3D - 299 354 IPR023408 -
Cpe07g00169 709 Gene3D - 163 297 - -
Cpe07g00169 709 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 2, CHLOROPLASTIC 1 376 - -
Cpe07g00169 709 MobiDBLite consensus disorder prediction 508 533 - -
Cpe07g00169 709 MobiDBLite consensus disorder prediction 614 631 - -
Cpe07g00169 709 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 2, CHLOROPLASTIC 404 701 - -
Cpe07g00169 709 MobiDBLite consensus disorder prediction 534 578 - -
Cpe07g00169 709 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 404 701 IPR045042 -
Cpe07g00169 709 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 1 376 IPR045042 -
Cpe07g00169 709 MobiDBLite consensus disorder prediction 508 709 - -
Cpe07g00169 709 SUPERFAMILY Sm-like ribonucleoproteins 283 353 IPR010920 -
Cpe07g00169 709 Pfam Mechanosensitive ion channel 240 368 IPR006685 GO:0016020|GO:0055085
Cpe07g00169 709 MobiDBLite consensus disorder prediction 579 593 - -
Cpe07g00169 709 MobiDBLite consensus disorder prediction 672 687 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00169 Cpe-Chr7:1006208 Cpe14g00646 Cpe-Chr14:4178988 0 dispersed
Cpe11g00479 Cpe-Chr11:2754517 Cpe07g00169 Cpe-Chr7:1006208 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00169 K22047 - csv:101213477 1096.65