Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00170 ATGAGGAAGGCAAGCCGTCAAACGAAGCAAAAGGGAGAAGCCGATGCCTCGTCGTCCTCGGTCACATCGGCTACGGACAGTAGAGACTACGAAAAGAGAATTCAAGAGCTCGAGCGTGAAAATAAAGCGTTTCAGAAAGAAATTAAAGATCTAAAAGACAGATTAGAAATTGCTTCATCAAGCGATGCGAATAGTGCTAAAAAACTCAGAGAAGGTTATATTCAGAAGTTGGATGTTCTTGAAGATCAGGTCACAGAATTGAAGAAGAAACTAGATGTTCAGTCTCAGCTTTCAACCAGAAGGCCAAAAGGTGATGGAGCAACTAAACAGACAGATTTTGAGATCATGAGTTTGAAGGCTCAGAAGGTTCAACTACAATGCAAGATGAAGCTAGAGTCTGTGCAGTTCAGATTATGTAAAGGTTCATTGGAGAAGGAAGTTCTTCAGCTCAAGAGAGAGAATAGAAGAAATGAGCATGAAATGAATAAGCTCCGAACTTCAAACCAAAGACTAAAGATGGTTCTGCAACGGAAGACCGAGGAAGCTTCTGAAATTACAAAAAAGATAAGAAACCTTTTGGAATCTCGAAGAACTTCTGCACAAAGAAGAACAGGTGCCAGACAGGAAAATGTTACTTCCAGTCAGTCTGTTGAGAATGAATTCGAAGTCACAGCGAGCTTACATGAGCTGTGTTCCCAGTATGAGCATCAAATAGAAGAGAAGGATAAGGAAATTGCAAAACTTCAGGAAGAAGCAGATGCCCTAAAGCAAGAACAAACATGGTACCAATCACTGGAGACTGATAACGTATTGGGAATCAATCAAGATGTGGCTGAACTAAAGGAACAGATGGATGATTCCGGTCCATCCTCTGCCAGCAATGGGAGTAATAATCTATTCGAGCAGTTCGCTATAGCTGGAGAAGAACATCAACACGGGTTTAACGTGGCAACGAAGAGAACTGTAAAAGCAGAATGCTGCTCTTGCAGCAAGAAATCACTGTGCAAGACAACGAAGTGCAAATGCCGATCAACCGGAAGCAGCTGTGGGTCATCATGTGGATGTGCGCGTGGAAAGTGCAGCAACAGAGATGACAAACCAAGTGAGATGGTCGATGAATTTGGGCCACAAATGAATCCTTTATCTGACATAAAAAACTTATTGACCAATTAG 1173 42.03 MRKASRQTKQKGEADASSSSVTSATDSRDYEKRIQELERENKAFQKEIKDLKDRLEIASSSDANSAKKLREGYIQKLDVLEDQVTELKKKLDVQSQLSTRRPKGDGATKQTDFEIMSLKAQKVQLQCKMKLESVQFRLCKGSLEKEVLQLKRENRRNEHEMNKLRTSNQRLKMVLQRKTEEASEITKKIRNLLESRRTSAQRRTGARQENVTSSQSVENEFEVTASLHELCSQYEHQIEEKDKEIAKLQEEADALKQEQTWYQSLETDNVLGINQDVAELKEQMDDSGPSSASNGSNNLFEQFAIAGEEHQHGFNVATKRTVKAECCSCSKKSLCKTTKCKCRSTGSSCGSSCGCARGKCSNRDDKPSEMVDEFGPQMNPLSDIKNLLTN 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1013174 1018691 + Cp4.1LG07g01670.1 Cpe07g00170 471977

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00170 390 MobiDBLite consensus disorder prediction 194 217 - -
Cpe07g00170 390 PANTHER KINESIN-RELATED PROTEIN 6 1 285 - -
Cpe07g00170 390 Coils Coil 27 61 - -
Cpe07g00170 390 MobiDBLite consensus disorder prediction 1 36 - -
Cpe07g00170 390 MobiDBLite consensus disorder prediction 11 25 - -
Cpe07g00170 390 Coils Coil 63 97 - -
Cpe07g00170 390 Coils Coil 231 258 - -
Cpe07g00170 390 PANTHER KINESIN KIF4-LIKE PROTEIN, PUTATIVE-RELATED 289 370 - -
Cpe07g00170 390 PANTHER KINESIN KIF4-LIKE PROTEIN, PUTATIVE-RELATED 1 285 - -
Cpe07g00170 390 PANTHER KINESIN-RELATED PROTEIN 6 289 370 - -
Cpe07g00170 390 Coils Coil 140 195 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00170 - - - bhj:120075292 521.161
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00170 Cpe-Chr7:1013174 Cpe02g00191 Cpe-Chr2:993679 2.82E-39 dispersed
Cpe11g00478 Cpe-Chr11:2748734 Cpe07g00170 Cpe-Chr7:1013174 0 wgd
Cpe02g00340 Cpe-Chr2:1827332 Cpe07g00170 Cpe-Chr7:1013174 1.05E-09 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g515 . . . . Bpe02g00139 . . . . . Cma01g01646 . . . Sed05g1562 . Cpe07g00170 Bhi04g01382 Tan02g2480 Cmetu04g1739 . Hepe10g0431 . Lcy13g1480 . . . . . . . Cone4ag1297 Cone7ag0858 . . Lsi04g02279 Csa03g04492 . . . . Bda11g00799 . . . . . . Cmo01g01696 . . . . . . . . . . . . . . Cla11g01423 Cam11g1479 Cec11g1509 Cco11g1505 Clacu11g1640 Cmu11g1458 Cre11g1876 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007970 0 1 1 0 0 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 4 1 2 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe07g00170 Cpe_Chr07 FPKM 17.267332 19.45767 16.392706 16.551796 16.198977 15.76041 16.441069 21.46608 20.187456 22.778585