Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00176 ATGTACGGACGTCCTCAACCCTTGACCGTAGGCGACCAGATCGCCTCCGTCCCTGACTGTGGCGACGGCGGCGAGCCTTTGGATAATCGCCTTGTTCGATATGGAGCTCACGCTCTTGAAGACGGCGCTGGAGTAGGCGGTATGATTGAGGATCTTAACCCTGATGCCGTTTATGCTTCCGCCGGTGATGGTTCAGACATGGCTATTCAACGCAGCGATGGTTCAAGCCAGCTCACACTTTCATTCCGTGGTCAAGTGTATCTTTTCGATGCGGTTTCTCCTGAGAAGGTTCAAGCAGTGTTATTATTGTTGGGTGGTAGCGAACTATCTTCTGGTCAGCAAAGCGTGGATTTGGTAACTCAGAGTCAGAGGAATGCTGTGGACTTCCCCGGACGTAGTAGTCAACCGCAGAGGGCAGCCTCGTTAAGTCGGTTTAGGCAGAAAAGGAAGGAGCGATGTTTTGACAAAAAAGTCCGATATGGTGTTCGTCAGGAGGTTGCTTTCAGGATGCAACGCAACAAAGGACAGTTTACTTCTTCCAAGAAGCCTGATGGTTCGTACAGCCATGGTAGTGTTTCAGAGCAAGGTCAAGAAGAAAGTCCACTAGAAACTTTATGCACAAATTGTGGCACAAGTTCAATGGCTACCCCAATGATGCGGCGAGGACCATCTGGTCCTAGATCACTTTGCAATGCCTGTGGACTTTTTTGGGCAAACAGGGGCACTTTAAGGGATCTCTCGAAGAGAAGTCAGGACCATCGGGTGACTCCAGCCGGGCAGGGCTTCATTTCTGGTGCAGTTAGGGCTTTCGACAAATTCATGGCGGCTGCTAATCCTCAGCCTTTGCAAGCGCGTCCTTTCCAGGAACATGTCCAAGTTCCTACAATGATGGGGGACGACGACGGTGAATATGAAGATGGTGGTGGTGGTGGTGGCGGCGGCGGCGGCGGCGGTGACGTTATGGATGATGTCGAAGAGGCTCATATGACTTCTGTGAGCGTCGCGAACCTTGGAGGTTTGGTTATGGCGTCTAGAACTAGTGAACTTACGCTTTCTTTCGAGGGCGAGGTTTATGTGTTCCCTGCAGTTACTCCCGAAAAGGTACAAGCCGTGCTCTTACTTCTTGGAGGGCGTGACGTACCAACCAGCGTACCCACAATGGAAGTACCATATGATCATATGAACAGGGGTATGGTTGACACCCCAAAGCGCTCCAACTTATCACGGAGAATAGCCTCCCTGGTTAGATTTCGTGAAAAACGGAAAGAGAGATGTTTTGACAAGAAAATTAGGTACACCGTACGGAAAGAGGTTGCACAGAGGATGCACCGTAAGAATGGCCAGTTTGCATCCTTAAAAGAAAGTTCAGGTGCTTCAAGTTGGGAGTCAGCACATAGTTGCCTCCAAGATGGTACTCGTTCAGAAACTGTTTTGCGGAAATGTCAACATTGTGGTGTTAGTGAGAACAATACACCTGCAATGCGTCGTGGCCCTGCTGGACCAAGAACTTTATGCAATGCATGTGGTTTGATGTGGGCAAACAAGGAAACCCCAATGGATGTCAAACCTACAATCATGGAGGGAGAATTTTCGGGCATCCCGGATGAACATGGAACTCCCGAGGATCCTGGTAAAACTATGACTGAGGGCTCGAGTAATCCTTCCGTTAACCTAGATGAGGAGGAAGACATAAATGAAACCACTGGTGGCCAAACAAATTCGTTGCCCATGCAAATTGTCAATGATTCAACAAATGATGATGAGCAGGAACCTCTTATTGAACTTGCTAATCCTTCGGATACCGATATAGACATCCCCACTAACTTTGATTAG 1833 48.94 MYGRPQPLTVGDQIASVPDCGDGGEPLDNRLVRYGAHALEDGAGVGGMIEDLNPDAVYASAGDGSDMAIQRSDGSSQLTLSFRGQVYLFDAVSPEKVQAVLLLLGGSELSSGQQSVDLVTQSQRNAVDFPGRSSQPQRAASLSRFRQKRKERCFDKKVRYGVRQEVAFRMQRNKGQFTSSKKPDGSYSHGSVSEQGQEESPLETLCTNCGTSSMATPMMRRGPSGPRSLCNACGLFWANRGTLRDLSKRSQDHRVTPAGQGFISGAVRAFDKFMAAANPQPLQARPFQEHVQVPTMMGDDDGEYEDGGGGGGGGGGGGDVMDDVEEAHMTSVSVANLGGLVMASRTSELTLSFEGEVYVFPAVTPEKVQAVLLLLGGRDVPTSVPTMEVPYDHMNRGMVDTPKRSNLSRRIASLVRFREKRKERCFDKKIRYTVRKEVAQRMHRKNGQFASLKESSGASSWESAHSCLQDGTRSETVLRKCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKETPMDVKPTIMEGEFSGIPDEHGTPEDPGKTMTEGSSNPSVNLDEEEDINETTGGQTNSLPMQIVNDSTNDDEQEPLIELANPSDTDIDIPTNFD 610
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1051500 1064423 + Cp4.1LG07g01700.1 Cpe07g00176 471983

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00176 610 CDD ZnF_GATA 480 515 IPR000679 GO:0006355|GO:0043565
Cpe07g00176 610 ProSiteProfiles CCT domain profile. 410 452 IPR010402 GO:0005515
Cpe07g00176 610 MobiDBLite consensus disorder prediction 171 199 - -
Cpe07g00176 610 PANTHER GATA TRANSCRIPTION FACTOR 28 516 610 IPR045280 GO:0006355
Cpe07g00176 610 PANTHER GATA TRANSCRIPTION FACTOR 28 274 517 IPR045280 GO:0006355
Cpe07g00176 610 Pfam GATA zinc finger 206 242 IPR000679 GO:0006355|GO:0043565
Cpe07g00176 610 Pfam GATA zinc finger 481 517 IPR000679 GO:0006355|GO:0043565
Cpe07g00176 610 PANTHER GATA TRANSCRIPTION FACTOR 28 66 251 IPR045280 GO:0006355
Cpe07g00176 610 MobiDBLite consensus disorder prediction 298 318 - -
Cpe07g00176 610 ProSitePatterns GATA-type zinc finger domain. 481 508 IPR000679 GO:0006355|GO:0043565
Cpe07g00176 610 ProSitePatterns GATA-type zinc finger domain. 206 233 IPR000679 GO:0006355|GO:0043565
Cpe07g00176 610 MobiDBLite consensus disorder prediction 126 142 - -
Cpe07g00176 610 ProSiteProfiles CCT domain profile. 138 180 IPR010402 GO:0005515
Cpe07g00176 610 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 199 250 - -
Cpe07g00176 610 Pfam tify domain 73 105 IPR010399 -
Cpe07g00176 610 Pfam tify domain 345 376 IPR010399 -
Cpe07g00176 610 ProSiteProfiles Tify domain profile. 342 377 IPR010399 -
Cpe07g00176 610 PANTHER GATA TRANSCRIPTION FACTOR 28-LIKE ISOFORM X1 66 251 - -
Cpe07g00176 610 ProSiteProfiles Tify domain profile. 71 106 IPR010399 -
Cpe07g00176 610 PANTHER GATA TRANSCRIPTION FACTOR 28-LIKE ISOFORM X1 516 610 - -
Cpe07g00176 610 PANTHER GATA TRANSCRIPTION FACTOR 28-LIKE ISOFORM X1 274 517 - -
Cpe07g00176 610 SMART tify_2 342 377 IPR010399 -
Cpe07g00176 610 SMART tify_2 71 106 IPR010399 -
Cpe07g00176 610 ProSiteProfiles GATA-type zinc finger domain profile. 206 251 IPR000679 GO:0006355|GO:0043565
Cpe07g00176 610 Pfam CCT motif 410 451 IPR010402 GO:0005515
Cpe07g00176 610 Pfam CCT motif 138 180 IPR010402 GO:0005515
Cpe07g00176 610 MobiDBLite consensus disorder prediction 531 610 - -
Cpe07g00176 610 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 476 519 - -
Cpe07g00176 610 CDD ZnF_GATA 206 252 IPR000679 GO:0006355|GO:0043565
Cpe07g00176 610 SMART GATA_3 475 528 IPR000679 GO:0006355|GO:0043565
Cpe07g00176 610 SMART GATA_3 200 253 IPR000679 GO:0006355|GO:0043565
Cpe07g00176 610 Gene3D - 197 256 IPR013088 GO:0006355|GO:0008270
Cpe07g00176 610 MobiDBLite consensus disorder prediction 126 145 - -
Cpe07g00176 610 MobiDBLite consensus disorder prediction 567 586 - -
Cpe07g00176 610 Gene3D - 477 523 IPR013088 GO:0006355|GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00176 - - - cmax:111495925 587.8
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00176 Cpe-Chr7:1051500 Cpe15g00382 Cpe-Chr15:5041268 3.79E-47 dispersed
Cpe11g00472 Cpe-Chr11:2698630 Cpe07g00176 Cpe-Chr7:1051500 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g532 . Blo12g00738 . . Bpe02g00146 Bpe04g00413 Bma04g00427 Bma01g02579 Cmo05g00563 Cmo12g00161 . . . . Sed03g1396 . Cpe07g00176 Bhi04g01396 Tan02g2466 Cmetu03g0931 . . . . . . . . . . . . . . . . . . . . . Bda11g00807 . . . . . . . . Cma12g00207 . . . . . . . . . . . . . . . . . . . Lsi08g01017 Csa02g02199 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe12g00537 CST 1 230 Tify Gene Family AT3G21175 54.8 9.9e-57 217.2
Cpe17g00409 CST 1 229 Tify Gene Family AT3G21175 55.5 3.8e-56 215.3
Cpe07g00176 . 48 255 Tify Gene Family AT4G24470 57.3 7.9e-63 238.0
Cpe11g00472 . 48 255 Tify Gene Family AT4G24470 57.3 1.4e-62 237.3
Cpe17g00409 CST 1 264 Tify Gene Family AT1G51600 59.6 9.8e-79 290.8
Cpe12g00537 CST 1 265 Tify Gene Family AT1G51600 58.6 1.4e-77 287.0
Cpe04g00363 . 86 287 Tify Gene Family AT1G51600 57.1 4.2e-53 205.7
Cpe07g00176 . 348 521 Tify Gene Family AT1G51600 56.4 1.7e-46 183.7
Cpe11g00472 . 72 250 Tify Gene Family AT1G51600 56.0 3.8e-46 182.6
Cpe07g00176 . 48 255 Tify Gene Family AT4G24470 57.3 7.9e-63 238.0
Cpe11g00472 . 48 255 Tify Gene Family AT4G24470 57.3 1.4e-62 237.3
Cpe17g00409 CST 1 264 Tify Gene Family AT1G51600 59.6 9.8e-79 290.8
Cpe12g00537 CST 1 265 Tify Gene Family AT1G51600 58.6 1.4e-77 287.0
Cpe04g00363 . 86 287 Tify Gene Family AT1G51600 57.1 4.2e-53 205.7
Cpe07g00176 . 348 521 Tify Gene Family AT1G51600 56.4 1.7e-46 183.7
Cpe11g00472 . 72 250 Tify Gene Family AT1G51600 56.0 3.8e-46 182.6
Cpe12g00537 CST 1 230 Tify Gene Family AT3G21175 54.8 9.9e-57 217.2
Cpe17g00409 CST 1 229 Tify Gene Family AT3G21175 55.5 3.8e-56 215.3
Cpe12g00176 CST 1 180 Tify Gene Family AT4G14713 52.6 4.0e-45 178.7
Cpe17g00164 CST 1 180 Tify Gene Family AT4G14713 51.6 2.6e-44 176.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003566 2 4 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 0 1 1 4 6 1 47
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49715 PF06203 CCT 2.80E-13 CL0281 Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe07g00176 Cpe_Chr07 FPKM 4.378717 5.289671 0.572941 0.341315 6.098653 6.821084 6.321959 0.320307 0.047353 0.299338