Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00176 ATGTACGGACGTCCTCAACCCTTGACCGTAGGCGACCAGATCGCCTCCGTCCCTGACTGTGGCGACGGCGGCGAGCCTTTGGATAATCGCCTTGTTCGATATGGAGCTCACGCTCTTGAAGACGGCGCTGGAGTAGGCGGTATGATTGAGGATCTTAACCCTGATGCCGTTTATGCTTCCGCCGGTGATGGTTCAGACATGGCTATTCAACGCAGCGATGGTTCAAGCCAGCTCACACTTTCATTCCGTGGTCAAGTGTATCTTTTCGATGCGGTTTCTCCTGAGAAGGTTCAAGCAGTGTTATTATTGTTGGGTGGTAGCGAACTATCTTCTGGTCAGCAAAGCGTGGATTTGGTAACTCAGAGTCAGAGGAATGCTGTGGACTTCCCCGGACGTAGTAGTCAACCGCAGAGGGCAGCCTCGTTAAGTCGGTTTAGGCAGAAAAGGAAGGAGCGATGTTTTGACAAAAAAGTCCGATATGGTGTTCGTCAGGAGGTTGCTTTCAGGATGCAACGCAACAAAGGACAGTTTACTTCTTCCAAGAAGCCTGATGGTTCGTACAGCCATGGTAGTGTTTCAGAGCAAGGTCAAGAAGAAAGTCCACTAGAAACTTTATGCACAAATTGTGGCACAAGTTCAATGGCTACCCCAATGATGCGGCGAGGACCATCTGGTCCTAGATCACTTTGCAATGCCTGTGGACTTTTTTGGGCAAACAGGGGCACTTTAAGGGATCTCTCGAAGAGAAGTCAGGACCATCGGGTGACTCCAGCCGGGCAGGGCTTCATTTCTGGTGCAGTTAGGGCTTTCGACAAATTCATGGCGGCTGCTAATCCTCAGCCTTTGCAAGCGCGTCCTTTCCAGGAACATGTCCAAGTTCCTACAATGATGGGGGACGACGACGGTGAATATGAAGATGGTGGTGGTGGTGGTGGCGGCGGCGGCGGCGGCGGTGACGTTATGGATGATGTCGAAGAGGCTCATATGACTTCTGTGAGCGTCGCGAACCTTGGAGGTTTGGTTATGGCGTCTAGAACTAGTGAACTTACGCTTTCTTTCGAGGGCGAGGTTTATGTGTTCCCTGCAGTTACTCCCGAAAAGGTACAAGCCGTGCTCTTACTTCTTGGAGGGCGTGACGTACCAACCAGCGTACCCACAATGGAAGTACCATATGATCATATGAACAGGGGTATGGTTGACACCCCAAAGCGCTCCAACTTATCACGGAGAATAGCCTCCCTGGTTAGATTTCGTGAAAAACGGAAAGAGAGATGTTTTGACAAGAAAATTAGGTACACCGTACGGAAAGAGGTTGCACAGAGGATGCACCGTAAGAATGGCCAGTTTGCATCCTTAAAAGAAAGTTCAGGTGCTTCAAGTTGGGAGTCAGCACATAGTTGCCTCCAAGATGGTACTCGTTCAGAAACTGTTTTGCGGAAATGTCAACATTGTGGTGTTAGTGAGAACAATACACCTGCAATGCGTCGTGGCCCTGCTGGACCAAGAACTTTATGCAATGCATGTGGTTTGATGTGGGCAAACAAGGAAACCCCAATGGATGTCAAACCTACAATCATGGAGGGAGAATTTTCGGGCATCCCGGATGAACATGGAACTCCCGAGGATCCTGGTAAAACTATGACTGAGGGCTCGAGTAATCCTTCCGTTAACCTAGATGAGGAGGAAGACATAAATGAAACCACTGGTGGCCAAACAAATTCGTTGCCCATGCAAATTGTCAATGATTCAACAAATGATGATGAGCAGGAACCTCTTATTGAACTTGCTAATCCTTCGGATACCGATATAGACATCCCCACTAACTTTGATTAG 1833 48.94 MYGRPQPLTVGDQIASVPDCGDGGEPLDNRLVRYGAHALEDGAGVGGMIEDLNPDAVYASAGDGSDMAIQRSDGSSQLTLSFRGQVYLFDAVSPEKVQAVLLLLGGSELSSGQQSVDLVTQSQRNAVDFPGRSSQPQRAASLSRFRQKRKERCFDKKVRYGVRQEVAFRMQRNKGQFTSSKKPDGSYSHGSVSEQGQEESPLETLCTNCGTSSMATPMMRRGPSGPRSLCNACGLFWANRGTLRDLSKRSQDHRVTPAGQGFISGAVRAFDKFMAAANPQPLQARPFQEHVQVPTMMGDDDGEYEDGGGGGGGGGGGGDVMDDVEEAHMTSVSVANLGGLVMASRTSELTLSFEGEVYVFPAVTPEKVQAVLLLLGGRDVPTSVPTMEVPYDHMNRGMVDTPKRSNLSRRIASLVRFREKRKERCFDKKIRYTVRKEVAQRMHRKNGQFASLKESSGASSWESAHSCLQDGTRSETVLRKCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKETPMDVKPTIMEGEFSGIPDEHGTPEDPGKTMTEGSSNPSVNLDEEEDINETTGGQTNSLPMQIVNDSTNDDEQEPLIELANPSDTDIDIPTNFD 610
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1051500 1064423 + Cp4.1LG07g01700.1 Cpe07g00176 471983
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00176 610 CDD ZnF_GATA 480 515 IPR000679 GO:0006355|GO:0043565
Cpe07g00176 610 ProSiteProfiles CCT domain profile. 410 452 IPR010402 GO:0005515
Cpe07g00176 610 MobiDBLite consensus disorder prediction 171 199 - -
Cpe07g00176 610 PANTHER GATA TRANSCRIPTION FACTOR 28 516 610 IPR045280 GO:0006355
Cpe07g00176 610 PANTHER GATA TRANSCRIPTION FACTOR 28 274 517 IPR045280 GO:0006355
Cpe07g00176 610 Pfam GATA zinc finger 206 242 IPR000679 GO:0006355|GO:0043565
Cpe07g00176 610 Pfam GATA zinc finger 481 517 IPR000679 GO:0006355|GO:0043565
Cpe07g00176 610 PANTHER GATA TRANSCRIPTION FACTOR 28 66 251 IPR045280 GO:0006355
Cpe07g00176 610 MobiDBLite consensus disorder prediction 298 318 - -
Cpe07g00176 610 ProSitePatterns GATA-type zinc finger domain. 481 508 IPR000679 GO:0006355|GO:0043565
Cpe07g00176 610 ProSitePatterns GATA-type zinc finger domain. 206 233 IPR000679 GO:0006355|GO:0043565
Cpe07g00176 610 MobiDBLite consensus disorder prediction 126 142 - -
Cpe07g00176 610 ProSiteProfiles CCT domain profile. 138 180 IPR010402 GO:0005515
Cpe07g00176 610 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 199 250 - -
Cpe07g00176 610 Pfam tify domain 73 105 IPR010399 -
Cpe07g00176 610 Pfam tify domain 345 376 IPR010399 -
Cpe07g00176 610 ProSiteProfiles Tify domain profile. 342 377 IPR010399 -
Cpe07g00176 610 PANTHER GATA TRANSCRIPTION FACTOR 28-LIKE ISOFORM X1 66 251 - -
Cpe07g00176 610 ProSiteProfiles Tify domain profile. 71 106 IPR010399 -
Cpe07g00176 610 PANTHER GATA TRANSCRIPTION FACTOR 28-LIKE ISOFORM X1 516 610 - -
Cpe07g00176 610 PANTHER GATA TRANSCRIPTION FACTOR 28-LIKE ISOFORM X1 274 517 - -
Cpe07g00176 610 SMART tify_2 342 377 IPR010399 -
Cpe07g00176 610 SMART tify_2 71 106 IPR010399 -
Cpe07g00176 610 ProSiteProfiles GATA-type zinc finger domain profile. 206 251 IPR000679 GO:0006355|GO:0043565
Cpe07g00176 610 Pfam CCT motif 410 451 IPR010402 GO:0005515
Cpe07g00176 610 Pfam CCT motif 138 180 IPR010402 GO:0005515
Cpe07g00176 610 MobiDBLite consensus disorder prediction 531 610 - -
Cpe07g00176 610 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 476 519 - -
Cpe07g00176 610 CDD ZnF_GATA 206 252 IPR000679 GO:0006355|GO:0043565
Cpe07g00176 610 SMART GATA_3 475 528 IPR000679 GO:0006355|GO:0043565
Cpe07g00176 610 SMART GATA_3 200 253 IPR000679 GO:0006355|GO:0043565
Cpe07g00176 610 Gene3D - 197 256 IPR013088 GO:0006355|GO:0008270
Cpe07g00176 610 MobiDBLite consensus disorder prediction 126 145 - -
Cpe07g00176 610 MobiDBLite consensus disorder prediction 567 586 - -
Cpe07g00176 610 Gene3D - 477 523 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00176 Cpe-Chr7:1051500 Cpe15g00382 Cpe-Chr15:5041268 3.79E-47 dispersed
Cpe11g00472 Cpe-Chr11:2698630 Cpe07g00176 Cpe-Chr7:1051500 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49715 PF06203 CCT 2.80E-13 CL0281 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00176 - - cmax:111495925 587.8