Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe07g00181 | ATGGTCTTCACTCTCTGCTGTGGAGTCGCGGCTCCATTGCTATCGGCCTCTGCCGTTCGAGGTTCTTTTGCCGTTCAGCTTCCGATTATCCAATCTCCTCATCTCCCTAACGGATTCCTATCTTTCTCTCTCTCTGTCGTTTGCGTTTCTCTTGAGATTCTTTGTTTGATCAGTGTTCTTGTTGGTTTACTAATGGAAAACGTATGTCAGGTCGAAGTTTGCCGGTCAAGTAAGTCTCGCGTTCTTTGTGGTCGGATTAAACTAGATGTTTTTGGTCGCTATATCTTTTGTTTTGTGGTTTCTAGTATCTTATGTAAGGTAAGAAATTGGCTGAAAGCATTTTCAAGAAAAACTTGCGCTTGTGTTAACATAGTACCTGTCCAAGTCACGTTGTCAAACCCAGATGGCATAGTGACCGGAATTCGATACAATGGAGTTGACAACTTGCTCGAAGTTCTCAATGACGAATCTAACAGAGGGTACTGGGACCTCGTGTGGAACCCATCAGCCTCTGCAACTGGATCGTTTGATGTGATAAAGGCTACAGATTTTGAGGTTATAGTGGAAAATGAAGACCAAGTGGAGCTCTCCTTTACGAGAAAATGGGATCTGTCTCTCGAGGGAAAGCTTGTGCCGTTAGAGATTGATAAAAGGTTTATAATGCTTCGGGGTTCGTCTGGATTCTATTCGTATGCTATTTACCAACACTTGAAAGAATGGCCTGGTTTCAACCTTGGTGAAACCAGACTCGCCTTCAAACTCAGAAAAGACAGGTTCCATTATATGGCCATGGCAGACAACAGACAGAGATCCATGCCACTTCCAGATGACCGGTCACCACCGAGAGGCCGAGCTCTGGCCTATCCAGAGGCTGTCCTGCTCGTGGATGACAAGTATCAGTATTCATGCGATAACAAAGATAGCGGCGTCCATGGATGGATATCCACCGACCCGCCAATCGGGTTCTGGCTAATCACCCCCAGCAATGAGTGCCGTTCCGGTGGACCCGTTAAACAGAACCTGACTTCGCACGTCGGCCCGACCACTCTTGCTGTTTTTATTAGCGCCCATTACACGGGAGAGGATCTGGTGCCGAAAATCGGAGCCGGCGAGGCGTGGAAGAAAGTCTTCGGTCCTGTGTTTATCTATCTCAACTCCACTTACGATTCTAGCGACGCACTTCAGCTCTGGGAAGATGGCAAATCACAGGCATCGATTGAAGTCCAAAGTTGGCCATACAGCTTCCCTGCTTCGGAGGATTTTCCAAAGTCAAACCAACGGGGTAATATCAGTGGCAGACTATTAGTCAAAGATAGCTACGTTAGTGAAGACTACATTCCAGCAAACGGTGCGTTTGTTGGCTTAGCTCCACCAGGAGACGTAGGTTCATGGCAAAGAGAGAGCAAGGGTTACCAATTTTGGAGCAGAGCAGATGAAGATGGATACTTTCTCATCGACCACGTAAGGCCTGGCGACTACAATTTATATGCATGGGTCCCCGGTTTTATTGGAGATTATCGTTACGATTCTATCATCAACATTACAGAAGGGGCGACACTGTGGGAAATTGGAGTCCCGGATCGCTCAGCAGCAGAGTTCTATGTTCCAGATCCAAATCCCAACTACGTCAATAAGCTCTATCTTAACCATCCCGATAAGTTTCGCCAGTATGGTCTGTGGGAAAGGTACAGCGAATTGTATCCCGATGCAGACTTGGTGTATACCGTCGGCGTCAGTGATTATACCAAGGACTGGTTCTTCGCTCAGGTTACCAGGAAGACAGAAAACGGAACATTCAAGGGAACAACATGGCAGGTGAAGTTCGAGCTGGACAACGTGGACAGCCAAGCAACTTACCAGCTTCGGGTCGCACTGGCCTCCGCTTCTCTCGCGGAATTGCAGGTTGGAGTAAATGACCCGAAAGCAAAGCCGGTGTTCTCAAGTGGGCTAATCGGAAGGGACAATTCAATCGCCAGACACGGCATTCACGGCCTGTACTGGCTCTACAACGTGAATATTCCGGGAAACCGGCTGGTCTCCGGCGACAACACCATCTTCTTCACGCAGCCGAGAAGCACCAGCCCTTTCCAAGCCATTATGTACGACTATATTCGTCTGGAAGCTCCTCCACCTCCGTCCTCCGCCCATGGTTTGTTATAA | 2160 | 48.15 | MVFTLCCGVAAPLLSASAVRGSFAVQLPIIQSPHLPNGFLSFSLSVVCVSLEILCLISVLVGLLMENVCQVEVCRSSKSRVLCGRIKLDVFGRYIFCFVVSSILCKVRNWLKAFSRKTCACVNIVPVQVTLSNPDGIVTGIRYNGVDNLLEVLNDESNRGYWDLVWNPSASATGSFDVIKATDFEVIVENEDQVELSFTRKWDLSLEGKLVPLEIDKRFIMLRGSSGFYSYAIYQHLKEWPGFNLGETRLAFKLRKDRFHYMAMADNRQRSMPLPDDRSPPRGRALAYPEAVLLVDDKYQYSCDNKDSGVHGWISTDPPIGFWLITPSNECRSGGPVKQNLTSHVGPTTLAVFISAHYTGEDLVPKIGAGEAWKKVFGPVFIYLNSTYDSSDALQLWEDGKSQASIEVQSWPYSFPASEDFPKSNQRGNISGRLLVKDSYVSEDYIPANGAFVGLAPPGDVGSWQRESKGYQFWSRADEDGYFLIDHVRPGDYNLYAWVPGFIGDYRYDSIINITEGATLWEIGVPDRSAAEFYVPDPNPNYVNKLYLNHPDKFRQYGLWERYSELYPDADLVYTVGVSDYTKDWFFAQVTRKTENGTFKGTTWQVKFELDNVDSQATYQLRVALASASLAELQVGVNDPKAKPVFSSGLIGRDNSIARHGIHGLYWLYNVNIPGNRLVSGDNTIFFTQPRSTSPFQAIMYDYIRLEAPPPPSSAHGLL | 719 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 1116332 | 1124604 | - | Cp4.1LG07g01810.1 | Cpe07g00181 | 471988 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe07g00181 | 719 | Pfam | Rhamnogalacturonate lyase family | 126 | 297 | IPR010325 | - | |
Cpe07g00181 | 719 | PANTHER | RHAMNOGALACTURONATE LYASE FAMILY PROTEIN | 127 | 710 | - | - | |
Cpe07g00181 | 719 | Pfam | Polysaccharide lyase family 4, domain II | 449 | 519 | IPR029413 | - | |
Cpe07g00181 | 719 | SUPERFAMILY | Starch-binding domain-like | 424 | 519 | IPR013784 | GO:0030246 | |
Cpe07g00181 | 719 | PANTHER | RHAMNOGALACTURONATE LYASE FAMILY PROTEIN | 127 | 710 | - | - | |
Cpe07g00181 | 719 | SUPERFAMILY | Galactose-binding domain-like | 517 | 707 | IPR008979 | - | |
Cpe07g00181 | 719 | CDD | RGL4_M | 426 | 519 | IPR029413 | - | |
Cpe07g00181 | 719 | CDD | RGL4_N | 126 | 393 | - | - | |
Cpe07g00181 | 719 | Gene3D | - | 122 | 395 | IPR014718 | GO:0030246 | |
Cpe07g00181 | 719 | Gene3D | - | 423 | 519 | - | - | |
Cpe07g00181 | 719 | Pfam | Polysaccharide lyase family 4, domain III | 519 | 706 | IPR029411 | - | |
Cpe07g00181 | 719 | SUPERFAMILY | Galactose mutarotase-like | 128 | 387 | IPR011013 | GO:0003824|GO:0005975|GO:0030246 | |
Cpe07g00181 | 719 | CDD | RGL4_C | 521 | 707 | - | - | |
Cpe07g00181 | 719 | Gene3D | - | 520 | 707 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cpe02g00484 | Cpe07g00181 | CCT | |
Cpe06g00459 | Cpe07g00181 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe02g00484 | Cpe-Chr2:2771306 | Cpe07g00181 | Cpe-Chr7:1116332 | 0 | dispersed | |
Cpe07g00181 | Cpe-Chr7:1116332 | Cpe10g00780 | Cpe-Chr10:4434707 | 0 | dispersed | |
Cpe10g00529 | Cpe-Chr10:3101888 | Cpe07g00181 | Cpe-Chr7:1116332 | 8.27E-48 | wgd | |
Cpe19g00728 | Cpe-Chr19:5660815 | Cpe07g00181 | Cpe-Chr7:1116332 | 0 | wgd | |
Cpe06g00459 | Cpe-Chr6:2689080 | Cpe07g00181 | Cpe-Chr7:1116332 | 7.91E-167 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe07g00181 | K18195 | - | csv:101215720 | 1106.28 |