Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00181 ATGGTCTTCACTCTCTGCTGTGGAGTCGCGGCTCCATTGCTATCGGCCTCTGCCGTTCGAGGTTCTTTTGCCGTTCAGCTTCCGATTATCCAATCTCCTCATCTCCCTAACGGATTCCTATCTTTCTCTCTCTCTGTCGTTTGCGTTTCTCTTGAGATTCTTTGTTTGATCAGTGTTCTTGTTGGTTTACTAATGGAAAACGTATGTCAGGTCGAAGTTTGCCGGTCAAGTAAGTCTCGCGTTCTTTGTGGTCGGATTAAACTAGATGTTTTTGGTCGCTATATCTTTTGTTTTGTGGTTTCTAGTATCTTATGTAAGGTAAGAAATTGGCTGAAAGCATTTTCAAGAAAAACTTGCGCTTGTGTTAACATAGTACCTGTCCAAGTCACGTTGTCAAACCCAGATGGCATAGTGACCGGAATTCGATACAATGGAGTTGACAACTTGCTCGAAGTTCTCAATGACGAATCTAACAGAGGGTACTGGGACCTCGTGTGGAACCCATCAGCCTCTGCAACTGGATCGTTTGATGTGATAAAGGCTACAGATTTTGAGGTTATAGTGGAAAATGAAGACCAAGTGGAGCTCTCCTTTACGAGAAAATGGGATCTGTCTCTCGAGGGAAAGCTTGTGCCGTTAGAGATTGATAAAAGGTTTATAATGCTTCGGGGTTCGTCTGGATTCTATTCGTATGCTATTTACCAACACTTGAAAGAATGGCCTGGTTTCAACCTTGGTGAAACCAGACTCGCCTTCAAACTCAGAAAAGACAGGTTCCATTATATGGCCATGGCAGACAACAGACAGAGATCCATGCCACTTCCAGATGACCGGTCACCACCGAGAGGCCGAGCTCTGGCCTATCCAGAGGCTGTCCTGCTCGTGGATGACAAGTATCAGTATTCATGCGATAACAAAGATAGCGGCGTCCATGGATGGATATCCACCGACCCGCCAATCGGGTTCTGGCTAATCACCCCCAGCAATGAGTGCCGTTCCGGTGGACCCGTTAAACAGAACCTGACTTCGCACGTCGGCCCGACCACTCTTGCTGTTTTTATTAGCGCCCATTACACGGGAGAGGATCTGGTGCCGAAAATCGGAGCCGGCGAGGCGTGGAAGAAAGTCTTCGGTCCTGTGTTTATCTATCTCAACTCCACTTACGATTCTAGCGACGCACTTCAGCTCTGGGAAGATGGCAAATCACAGGCATCGATTGAAGTCCAAAGTTGGCCATACAGCTTCCCTGCTTCGGAGGATTTTCCAAAGTCAAACCAACGGGGTAATATCAGTGGCAGACTATTAGTCAAAGATAGCTACGTTAGTGAAGACTACATTCCAGCAAACGGTGCGTTTGTTGGCTTAGCTCCACCAGGAGACGTAGGTTCATGGCAAAGAGAGAGCAAGGGTTACCAATTTTGGAGCAGAGCAGATGAAGATGGATACTTTCTCATCGACCACGTAAGGCCTGGCGACTACAATTTATATGCATGGGTCCCCGGTTTTATTGGAGATTATCGTTACGATTCTATCATCAACATTACAGAAGGGGCGACACTGTGGGAAATTGGAGTCCCGGATCGCTCAGCAGCAGAGTTCTATGTTCCAGATCCAAATCCCAACTACGTCAATAAGCTCTATCTTAACCATCCCGATAAGTTTCGCCAGTATGGTCTGTGGGAAAGGTACAGCGAATTGTATCCCGATGCAGACTTGGTGTATACCGTCGGCGTCAGTGATTATACCAAGGACTGGTTCTTCGCTCAGGTTACCAGGAAGACAGAAAACGGAACATTCAAGGGAACAACATGGCAGGTGAAGTTCGAGCTGGACAACGTGGACAGCCAAGCAACTTACCAGCTTCGGGTCGCACTGGCCTCCGCTTCTCTCGCGGAATTGCAGGTTGGAGTAAATGACCCGAAAGCAAAGCCGGTGTTCTCAAGTGGGCTAATCGGAAGGGACAATTCAATCGCCAGACACGGCATTCACGGCCTGTACTGGCTCTACAACGTGAATATTCCGGGAAACCGGCTGGTCTCCGGCGACAACACCATCTTCTTCACGCAGCCGAGAAGCACCAGCCCTTTCCAAGCCATTATGTACGACTATATTCGTCTGGAAGCTCCTCCACCTCCGTCCTCCGCCCATGGTTTGTTATAA 2160 48.15 MVFTLCCGVAAPLLSASAVRGSFAVQLPIIQSPHLPNGFLSFSLSVVCVSLEILCLISVLVGLLMENVCQVEVCRSSKSRVLCGRIKLDVFGRYIFCFVVSSILCKVRNWLKAFSRKTCACVNIVPVQVTLSNPDGIVTGIRYNGVDNLLEVLNDESNRGYWDLVWNPSASATGSFDVIKATDFEVIVENEDQVELSFTRKWDLSLEGKLVPLEIDKRFIMLRGSSGFYSYAIYQHLKEWPGFNLGETRLAFKLRKDRFHYMAMADNRQRSMPLPDDRSPPRGRALAYPEAVLLVDDKYQYSCDNKDSGVHGWISTDPPIGFWLITPSNECRSGGPVKQNLTSHVGPTTLAVFISAHYTGEDLVPKIGAGEAWKKVFGPVFIYLNSTYDSSDALQLWEDGKSQASIEVQSWPYSFPASEDFPKSNQRGNISGRLLVKDSYVSEDYIPANGAFVGLAPPGDVGSWQRESKGYQFWSRADEDGYFLIDHVRPGDYNLYAWVPGFIGDYRYDSIINITEGATLWEIGVPDRSAAEFYVPDPNPNYVNKLYLNHPDKFRQYGLWERYSELYPDADLVYTVGVSDYTKDWFFAQVTRKTENGTFKGTTWQVKFELDNVDSQATYQLRVALASASLAELQVGVNDPKAKPVFSSGLIGRDNSIARHGIHGLYWLYNVNIPGNRLVSGDNTIFFTQPRSTSPFQAIMYDYIRLEAPPPPSSAHGLL 719
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1116332 1124604 - Cp4.1LG07g01810.1 Cpe07g00181 471988
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00181 719 Pfam Rhamnogalacturonate lyase family 126 297 IPR010325 -
Cpe07g00181 719 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 127 710 - -
Cpe07g00181 719 Pfam Polysaccharide lyase family 4, domain II 449 519 IPR029413 -
Cpe07g00181 719 SUPERFAMILY Starch-binding domain-like 424 519 IPR013784 GO:0030246
Cpe07g00181 719 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 127 710 - -
Cpe07g00181 719 SUPERFAMILY Galactose-binding domain-like 517 707 IPR008979 -
Cpe07g00181 719 CDD RGL4_M 426 519 IPR029413 -
Cpe07g00181 719 CDD RGL4_N 126 393 - -
Cpe07g00181 719 Gene3D - 122 395 IPR014718 GO:0030246
Cpe07g00181 719 Gene3D - 423 519 - -
Cpe07g00181 719 Pfam Polysaccharide lyase family 4, domain III 519 706 IPR029411 -
Cpe07g00181 719 SUPERFAMILY Galactose mutarotase-like 128 387 IPR011013 GO:0003824|GO:0005975|GO:0030246
Cpe07g00181 719 CDD RGL4_C 521 707 - -
Cpe07g00181 719 Gene3D - 520 707 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe02g00484 Cpe07g00181 CCT
Cpe06g00459 Cpe07g00181 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00484 Cpe-Chr2:2771306 Cpe07g00181 Cpe-Chr7:1116332 0 dispersed
Cpe07g00181 Cpe-Chr7:1116332 Cpe10g00780 Cpe-Chr10:4434707 0 dispersed
Cpe10g00529 Cpe-Chr10:3101888 Cpe07g00181 Cpe-Chr7:1116332 8.27E-48 wgd
Cpe19g00728 Cpe-Chr19:5660815 Cpe07g00181 Cpe-Chr7:1116332 0 wgd
Cpe06g00459 Cpe-Chr6:2689080 Cpe07g00181 Cpe-Chr7:1116332 7.91E-167 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00181 K18195 - csv:101215720 1106.28