Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00193 ATGGTGATGCCCGAGTCGTCTGAACGCCACCGGACCGCGTCTCGTCGAGCGAATCAACCGCCGACTCGGCCGCAACTTGGAGCTAGGGTTCCGCTCAAGCGGTTACTTCGCGTGGCATCTGTCGCATGTGGAATTCAATTCGGTTGGGCTTTGCAGCTCTCTCTTCTTACTCCTTATATTCAAGAGCTTGGTATTCCTCATGCTTGGTCAAGTCTCATATGGCTCTGTGGACCGCTTTCTGGCCTCTTTGTCCAGCCGCTCGTTGGCCACATGAGCGATCGCTGCACCAGCCGATACGGCCGCCGGAGGCCATTCATTGTAGCTGGAGCGCTTTCCATTGTACTCGCCGTTCTTATTATCGGTCACTCGGCGGACCTTGGTTGGTTGATTGGTGACAGAGGTGATGTTAGGCCTCGTGCGATTGGATTCTTTGTGTTTGGATTTTGGATTCTCGATGTCGCTAACAACTTAACGCAGGGTCCTTGTAGAGCTTTGCTTGCTGATCTTACCGGTAAGGATCATCGAAGGAATCGAGTGGCAAATGCTTATTTTTCACTATTTATGGCGATTGGTAATGTTTTTGGGTATGCCACTGGATCTTTTAGTGGCTGGTACAAGATCTTGCCGTTTACTCTTACCTCTGCATGCTCGGTTAATTGTGCAAATCTCAAGTCAGCTTTCTTGATTGATGTCGTATTCATTGCAATTACAACATATTTGAGTGTTTCAGCAGCTCAAGAGATTTCTCTAGATTCAAGCTGCAGGTCGTCCCTGGTAGTGGAAGAAGGTATGGGGCAATCAAGTCATGCTTCAGAAGCGTTTCTCTGGGAGTTGTTTCATACTTTTAGACACTTCTCCGGGTATATATGGGTAATTTTGCTTGTCACTTCCCTGACATGGGTAGCATGGTTTCCATTTATTCTATTTGATACTGATTGGATGGGTAGAGAGATTTATGGTGGCAAGCCAAATGAAGGACAGAGTTATAGTTCTGGAGTCAGAATGGGAGCATTTGGCCTGATGTTTAACTCTGTTGTCCTTGGAATAACTTCATTACTTATGGAGAAGCTGTGCAGAAAGTGGGGTGCTGGTTTTGTATGGGGAGTCTCTAATATTTTTATGGCTCTATGTTTCCTTTCTATACTGGTTGTCACCTATGTGGCAAACAATATGGGCTATATAGGCCATGAGCTTCCACCAAATAGTATCGTATCAGCTGCATTGATTATCTTTGCTCTTCTTGGCGTCCCTTTGGCAATTACTTACAGCATTCCATATGCCATGATCTCCTCGCGTGTTGAATCTTTGCAACTTGGTCAAGGTTTGTCTGCGGGTGTCTTGAACTTGGCAATAGTAATTCCTCAGGTTGTGGTATCCCTGGGAAGTGGACCATGGGATCAGCTGTTTGGTGGTGGAAATTCTCCAGCTTTTGCTGTGGCAGCATTTGCAGCCTTTGCAAGTGGACTCATTGCTATCGTGGCCCTTCCTCGGTCTAGTGCTCAGAATCCCAGAGCCCTCACATGA 1524 46.85 MVMPESSERHRTASRRANQPPTRPQLGARVPLKRLLRVASVACGIQFGWALQLSLLTPYIQELGIPHAWSSLIWLCGPLSGLFVQPLVGHMSDRCTSRYGRRRPFIVAGALSIVLAVLIIGHSADLGWLIGDRGDVRPRAIGFFVFGFWILDVANNLTQGPCRALLADLTGKDHRRNRVANAYFSLFMAIGNVFGYATGSFSGWYKILPFTLTSACSVNCANLKSAFLIDVVFIAITTYLSVSAAQEISLDSSCRSSLVVEEGMGQSSHASEAFLWELFHTFRHFSGYIWVILLVTSLTWVAWFPFILFDTDWMGREIYGGKPNEGQSYSSGVRMGAFGLMFNSVVLGITSLLMEKLCRKWGAGFVWGVSNIFMALCFLSILVVTYVANNMGYIGHELPPNSIVSAALIIFALLGVPLAITYSIPYAMISSRVESLQLGQGLSAGVLNLAIVIPQVVVSLGSGPWDQLFGGGNSPAFAVAAFAAFASGLIAIVALPRSSAQNPRALT 507
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1211848 1222603 - Cp4.1LG07g02570.1 Cpe07g00193 472000

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00193 507 TIGRFAM GPH_sucrose: sucrose/H+ symporter 30 499 IPR005989 GO:0005887|GO:0008515|GO:0015770
Cpe07g00193 507 Gene3D MFS general substrate transporter like domains 32 495 IPR036259 -
Cpe07g00193 507 CDD MFS_SLC45_SUC 35 474 - -
Cpe07g00193 507 MobiDBLite consensus disorder prediction 1 26 - -
Cpe07g00193 507 Pfam MFS/sugar transport protein 48 196 - -
Cpe07g00193 507 PANTHER SUCROSE/H+ SYMPORTER, PLANT, MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN-RELATED 8 505 - -
Cpe07g00193 507 PANTHER SUGAR TRANSPORTER 8 505 - -
Cpe07g00193 507 SUPERFAMILY MFS general substrate transporter 35 498 IPR036259 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00193 K15378 SLC45A1_2_4; solute carrier family 45, member 1/2/4 - csv:101220384 911.368
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00193 Cpe-Chr7:1211848 Cpe07g00646 Cpe-Chr7:4628819 1.58E-134 dispersed
Cpe07g00193 Cpe-Chr7:1211848 Cpe02g01353 Cpe-Chr2:11947402 1.80E-158 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g575 Blo01g01786 . . . Bpe02g00155 . . Bma01g02572 . Cmo12g00183 . . . Car12g00209 Sed08g1987 . Cpe07g00193 Bhi04g00897 Tan02g2516 Cmetu03g0103 . Hepe10g0399 . Lcy13g1450 Cla08g01190 Cam08g1654 Cec08g1231 Cco08g1350 Clacu08g1351 . Cre08g1137 . . . . . . . Cme03g01774 . . Bda11g00815 . . . . Bma02g00169 . . . Cma12g00228 . Car05g00514 . . . . . . . . . . . . . . . . . Lsi08g01052 Csa02g02236 Chy03g01280 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe02g01353 . 11 493 Sucrose Transporter Gene Family AT1G22710 62.1 1.7e-179 626.3
Cpe07g00193 . 32 496 Sucrose Transporter Gene Family AT1G22710 50.9 2.9e-139 492.7
Cpe02g01353 . 12 480 Sucrose Transporter Gene Family AT2G14670 62.6 1.2e-177 620.2
Cpe07g00193 . 31 496 Sucrose Transporter Gene Family AT2G14670 51.4 6.4e-136 481.5
Cpe02g01353 . 13 410 Sucrose Transporter Gene Family AT1G66570 60.5 1.8e-148 523.1
Cpe07g00646 . 152 562 Sucrose Transporter Gene Family AT2G02860 63.0 4.0e-156 548.5
Cpe02g01353 . 15 480 Sucrose Transporter Gene Family AT5G06170 60.0 1.4e-162 570.1
Cpe02g01353 . 12 480 Sucrose Transporter Gene Family AT5G43610 62.2 2.0e-174 609.4
Cpe07g00193 . 31 496 Sucrose Transporter Gene Family AT5G43610 50.7 1.1e-132 470.7
Cpe07g00193 . 12 503 Sucrose Transporter Gene Family AT1G09960 71.8 9.4e-207 716.8
Cpe02g01353 . 19 480 Sucrose Transporter Gene Family AT1G09960 51.5 2.7e-129 459.5
Cpe02g01353 . 5 496 Sucrose Transporter Gene Family AT1G71880 59.7 2.3e-173 605.9
Cpe07g00193 . 31 507 Sucrose Transporter Gene Family AT1G71880 51.2 2.5e-135 479.6
Cpe02g01353 . 13 485 Sucrose Transporter Gene Family AT1G71890 59.4 1.9e-167 586.3
Cpe02g01353 . 5 496 Sucrose Transporter Gene Family AT1G71880 59.7 2.3e-173 605.9
Cpe07g00193 . 31 507 Sucrose Transporter Gene Family AT1G71880 51.2 2.5e-135 479.6
Cpe02g01353 . 11 493 Sucrose Transporter Gene Family AT1G22710 62.1 1.7e-179 626.3
Cpe07g00193 . 32 496 Sucrose Transporter Gene Family AT1G22710 50.9 2.9e-139 492.7
Cpe07g00646 . 152 562 Sucrose Transporter Gene Family AT2G02860 63.0 4.0e-156 548.5
Cpe07g00193 . 12 503 Sucrose Transporter Gene Family AT1G09960 71.8 9.4e-207 716.8
Cpe02g01353 . 19 480 Sucrose Transporter Gene Family AT1G09960 51.5 2.7e-129 459.5
Cpe02g01353 . 13 485 Sucrose Transporter Gene Family AT1G71890 59.4 1.9e-167 586.3
Cpe02g01353 . 12 480 Sucrose Transporter Gene Family AT5G43610 62.2 2.0e-174 609.4
Cpe07g00193 . 31 496 Sucrose Transporter Gene Family AT5G43610 50.7 1.1e-132 470.7
Cpe02g01353 . 13 410 Sucrose Transporter Gene Family AT1G66570 60.5 1.8e-148 523.1
Cpe02g01353 . 12 480 Sucrose Transporter Gene Family AT2G14670 62.6 1.2e-177 620.2
Cpe07g00193 . 31 496 Sucrose Transporter Gene Family AT2G14670 51.4 6.4e-136 481.5
Cpe02g01353 . 15 480 Sucrose Transporter Gene Family AT5G06170 60.0 1.4e-162 570.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010988 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe07g00193 Cpe_Chr07 FPKM 7.302839 7.396601 23.204315 23.783966 347.556366 396.033905 350.487549 10.054742 10.942186 10.349742