Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00194 ATGGCTTTTCACTCAGCTTTCTTCCTGCTTTTGTTCCTCACTTCCTCCATCTCTGCTTCTTCTCAAGCTTCTACTGCTACTTCTACTGCTCCCAATCAGTCCCAGTTCTTCCTTCTCATGCAAAACACTGCCTCAGGAAAGTTCCTCACTGATTGGGATCTTTCCAAAGGTAAATCCTTCTGCAACTTCACCGGAATCGACTGCAATGANCAAGAGGTAAATCCTTCTGCAACTTCACCGGAATCGACTGCAATGACCGAGGGACGTTTTCCTCCAGGAATCACTAATTGTTCTCTCCTTGAAGAGCTTGACATGAGCTTCATGAATCTCAATGGAACAATCCCGGATTTGTCGCAAATGAAACAACTACGTCTGCTCGACTTATCGTACAATTCCTTCACTGGCGACTTTCCCATGTCGGTTTTCGACCTTGTGAATCTTGAGGTGCTGAATTTCAATGAGAATTATAATCTCAACTTATGGAAGTTGCCTGAGAAGATCTCCAGAATGAAGAAGCTGAAATCCATGGTGTTGACAACGTGTATGTTAGACGGGGAAATCCCGAGATCGATCGGGAACATGACGTCTCTTGTCGATCTCGAACTCAGTGGGAACTTTCTCAAGGGAGAGATCCCAAAAGAAATTTCCTTACTGAAGAACTTGCAACAGCTTGAACTCTATTACAATGAACTCACAGGAAACATACCAGAGGAGTTCGGAAATCTAACGGAGCTCGTCGACGTCGACATGTCGGTGAACCTTTTAACAGGAGAGCTACCAGAATCCATTTGCAAACTCCCAAAGCTTAAAGTTCTACAGATTTACAACAATAGTCTAACAGGAGAGATCCCAAGTGTACTAGCTAACTCAACAACACTAACTATGCTATCACTTTATGACAACTTTCTTACAGGACAGATTCCACAAAAGTTGGGGAAGTACTCACCAATGGTCGTCGTCGACTTGTCGGAAAATCGCCTGTCGGGGCCATTGCCATTGGATATATGCAGAGGAGGGGAATTGCTATACTTTCTTGTCCTGCAAAACAGCCTTTCTGGAGAAATCCCAGCAAGTTTCGCCAAATGCGAGTCGATTTTGAGGTTTCGGGTTAGTTTCAATCAGTTGGTAGGAGAAATTCCTCAAGAACTTTTGGCTCTCCCCCATGTTTCAATCATTGATGTTGCTCATAATCATCTCACTGGTTCCATTTCAAGTTCTATCTCACAGGCAAGAAACTTATCAGAGTTGTTCTTGCAAAGAAACAGGATTTCTGGAGTTATCCCGCCGGAGATTTCAGGAGCAACCAATCTGGTGAAGCTTGATCTCAGCAATAATCTTCTCTCCGATTATGCAGATTCATCAACGGCGACAACCAAATGCGATGTGTACAGTTTTGGGGTGGTTTTAATGGAGCTGATTACAGGGAAGAACCCGATTGAAGCCGAATATGGAGATAACAAGAACATTGCACACTGGATTTCGAACAAAATCGACACAAACGAACAAATTCTTGAGATTCTCGACAAGAGATTAAAAGGGTTGTTCATAAATGAGATAATTAAAGCATTGGGTATCGCAATTCGCTGTACTAAGAACAATCCAGAGCTCCGACCCGCCATGGGAGAGGTGGTTGAGCTTCTGCAAGAGGTGGATCCTTGCAAATATGATCAAGCTTCAAAGATGTCAAAAAAGTAG 1695 43.3 MAFHSAFFLLLFLTSSISASSQASTATSTAPNQSQFFLLMQNTASGKFLTDWDLSKGKSFCNFTGIDCNXQEVNPSATSPESTAMTEGRFPPGITNCSLLEELDMSFMNLNGTIPDLSQMKQLRLLDLSYNSFTGDFPMSVFDLVNLEVLNFNENYNLNLWKLPEKISRMKKLKSMVLTTCMLDGEIPRSIGNMTSLVDLELSGNFLKGEIPKEISLLKNLQQLELYYNELTGNIPEEFGNLTELVDVDMSVNLLTGELPESICKLPKLKVLQIYNNSLTGEIPSVLANSTTLTMLSLYDNFLTGQIPQKLGKYSPMVVVDLSENRLSGPLPLDICRGGELLYFLVLQNSLSGEIPASFAKCESILRFRVSFNQLVGEIPQELLALPHVSIIDVAHNHLTGSISSSISQARNLSELFLQRNRISGVIPPEISGATNLVKLDLSNNLLSDYADSSTATTKCDVYSFGVVLMELITGKNPIEAEYGDNKNIAHWISNKIDTNEQILEILDKRLKGLFINEIIKALGIAIRCTKNNPELRPAMGEVVELLQEVDPCKYDQASKMSKK 564
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1225364 1228620 + Cp4.1LG07g02670.1 Cpe07g00194 472001

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00194 564 Gene3D Transferase(Phosphotransferase) domain 1 451 564 - -
Cpe07g00194 564 SUPERFAMILY L domain-like 157 481 - -
Cpe07g00194 564 Gene3D Ribonuclease Inhibitor 301 448 IPR032675 -
Cpe07g00194 564 Pfam Protein tyrosine and serine/threonine kinase 453 547 IPR001245 GO:0004672|GO:0006468
Cpe07g00194 564 SUPERFAMILY Protein kinase-like (PK-like) 452 551 IPR011009 -
Cpe07g00194 564 Pfam Leucine rich repeat 387 447 IPR001611 GO:0005515
Cpe07g00194 564 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 449 563 - -
Cpe07g00194 564 PANTHER RECEPTOR-LIKE PROTEIN KINASE HSL1 86 448 - -
Cpe07g00194 564 PANTHER RECEPTOR-LIKE PROTEIN KINASE HSL1 9 71 - -
Cpe07g00194 564 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 86 448 - -
Cpe07g00194 564 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 9 71 - -
Cpe07g00194 564 PANTHER RECEPTOR-LIKE PROTEIN KINASE HSL1 449 563 - -
Cpe07g00194 564 Gene3D Ribonuclease Inhibitor 33 216 IPR032675 -
Cpe07g00194 564 Gene3D Ribonuclease Inhibitor 217 294 IPR032675 -
Cpe07g00194 564 SUPERFAMILY L domain-like 59 208 - -
Cpe07g00194 564 ProSiteProfiles Leucine-rich repeat profile. 436 457 IPR001611 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00194 - - - csv:101220145 673.7
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe07g00194 Cpe11g00500 CCT
Cpe02g00496 Cpe07g00194 CCT
Cpe06g00472 Cpe07g00194 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00194 Cpe-Chr7:1225364 Cpe01g02151 Cpe-Chr1:18099141 9.65E-83 dispersed
Cpe11g00500 Cpe-Chr11:2919597 Cpe07g00194 Cpe-Chr7:1225364 0 wgd
Cpe19g00710 Cpe-Chr19:5545685 Cpe07g00194 Cpe-Chr7:1225364 1.06E-08 wgd
Cpe06g00473 Cpe-Chr6:2792097 Cpe07g00194 Cpe-Chr7:1225364 2.08E-44 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g576 Blo01g01785 . . Bda03g00445 . Bpe04g00409 . Bma01g02569 Cmo05g00597 Cmo12g00184 Cma01g01455 Cma09g00611 . Car12g00210 . Cpe06g00472 Cpe07g00194 Bhi04g00891 . . . . . Lcy13g1799 . . . . . . . Cone4ag1266 Cone7ag0878 Cone17ag1151 Cone20ag0577 Lsi04g02309 Csa03g04527 Chy04g00175 Cme03g01772 . . . Bda13g01341 . Bpe14g00504 . Bma02g00096 . Cmo01g01507 Cmo09g00599 Cma12g00230 Cma05g00571 Car05g00517 Car09g00542 Cpe11g00500 Cpe02g00496 Bhi09g02546 . . . . . . . . . . . . . . Csa02g02237 Chy03g01278 Cme04g00205
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001786 1 2 3 2 2 1 3 1 1 2 2 2 4 2 1 4 1 4 3 1 2 2 2 2 1 2 2 2 2 1 60
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62493 PF07714 PK_Tyr_Ser-Thr 9.30E-06 CL0016 Cpe PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe07g00194 Cpe_Chr07 FPKM 11.943093 10.055325 0.41169 0.550039 11.743212 10.649031 10.746175 0.0 0.0 0.0