Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00203 ATGGAGGACCAGAGGCTGTTGGACAACGAGAGGCATCAGATCGAGCAGATTCTTCAGCTTGATAATGAGGAGTTGCAAGTTGAAGAAGTGGACTACCTCCCTGAATCCGATGACGATCGCGATGCTATTAATGATCATGGTGGTTATGAGGCCTTTGCAGAATTTACTTTCAATTCCTCTTTGGCATCTTTGCATACGTATCTTGGTGAGGTTGAGGATGCTCATCACAGAATGGCTTTCTTGGATGGTGGTGCCGTCCTGAACATTCCTGTATTTTATCTTGAAGGAGTTGTGTTGTTCCCAGAAGCTACTTTACCTCTCAGAGTGATACAATCAAATTTTATTGCTGCCATTGAGAGAGTGTTGACTCACTTTGATACTCCTAATACCATAGGTGTGGTTCACGTCTCTGTAGATTCTGAGAGTGATAGACTACGTTTTGCAAATATTGGGACAACTGCAGAGATTCGGCAGTTTCGGAGGTTGGAGGATGGTTCACTCAATGTTCTTGCTAGAGGGAAGCAGCGGTTTCGCCTTAGGCGCCGTTGGATTGATGTTGAAGGAGTGCCTTGTGGAGAAGTTCAAATTATCCAGGAAGATTTGCCATTAAGGACTCCGCGGGATGCTTTTGGAGATTTGGCTCCAAGGAATACTATTCAGCGCCACAGTCTCTCATGTGCATTGGCTTCATATACTACTTGCTCTAGACCATTTACGTCCAGGGATGAGGAGGATGATTCAGCCTCTAATTCTGAAGAAAGCTTTGAACGTGAGCTTTCATTGAGAGAGAGGAAAGTCCACCAAGCAGCAATTGGTTCCAGTGAGTCTTGTAGCGATGAGGAGATTTCTGGGTCAGAGGCAGAACACCAACACGCAATGTCACATCAAAATGACTCTGATTCTTTGAGTTTTTTGCATTCTGACTATGAGAAAGAAAGTGAAAAACCTTCCCCTGATATAGGAAAGAGTTCCACATCAGCTAAGGATTCTAGCGAGAGGAAAGAATTCAAAGGATGTCGAAGAAACTCAAGTTTTAATCACATGCATGGGGTCTCAAAAGCTTTTTTGCCATATTGGGTCTACTCAATGTACGACTCATATTGTCTTGCTCAAAAAGCAGCAGCTATGTGGAAGCAGATAGTGGGGGCACCAAACATGGATGGTTTTGTGAAGAATCCAGACATTTTATCATTCTATATTGCTAGTAAGATTCCAGTTTCTGAATCTACTAGACAGGAGCTTTTGGAGATTGATGGCATTTCGTATAGATTGCGTCGGGAAATTGAGTTACTTAAGTCTATCGATCTCATCCAATGTAAAAACTGTAAGACAGTCATAGCCAAGCGCAGCGATATGTTGGTGATGTCTAGTGACGGCCCACTCGGTGCTTATGTGAACCCCCATGGTTATGTGCATGAAATAATGACTCTTTACAGAGCAAATGGCTTAGCACTTAGAGGACGAGCTGAGACAGAATACAGTTGGTTCCCTGGGTACGCGTGGACAATCTCGATCTGCGCCACTTGTGAAACTCAGTTAGGATGGCTTTTTACTGCCACAAACAGGAATCTGAAACCCAGATCGTTTTGGGGAATTCGAAGCTCCCAGTTAGCCGATGCCACACGTTAA 1629 43.95 MEDQRLLDNERHQIEQILQLDNEELQVEEVDYLPESDDDRDAINDHGGYEAFAEFTFNSSLASLHTYLGEVEDAHHRMAFLDGGAVLNIPVFYLEGVVLFPEATLPLRVIQSNFIAAIERVLTHFDTPNTIGVVHVSVDSESDRLRFANIGTTAEIRQFRRLEDGSLNVLARGKQRFRLRRRWIDVEGVPCGEVQIIQEDLPLRTPRDAFGDLAPRNTIQRHSLSCALASYTTCSRPFTSRDEEDDSASNSEESFERELSLRERKVHQAAIGSSESCSDEEISGSEAEHQHAMSHQNDSDSLSFLHSDYEKESEKPSPDIGKSSTSAKDSSERKEFKGCRRNSSFNHMHGVSKAFLPYWVYSMYDSYCLAQKAAAMWKQIVGAPNMDGFVKNPDILSFYIASKIPVSESTRQELLEIDGISYRLRREIELLKSIDLIQCKNCKTVIAKRSDMLVMSSDGPLGAYVNPHGYVHEIMTLYRANGLALRGRAETEYSWFPGYAWTISICATCETQLGWLFTATNRNLKPRSFWGIRSSQLADATR 542
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1302356 1307648 + Cp4.1LG07g02460.1 Cpe07g00203 472010

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00203 542 Pfam ATP-dependent protease La (LON) substrate-binding domain 88 432 IPR003111 -
Cpe07g00203 542 Gene3D Peptide methionine sulfoxide reductase. 430 542 - -
Cpe07g00203 542 PANTHER CEREBLON 1 538 - -
Cpe07g00203 542 SMART lon_5 88 433 IPR003111 -
Cpe07g00203 542 MobiDBLite consensus disorder prediction 252 269 - -
Cpe07g00203 542 ProSiteProfiles CULT domain profile. 434 541 IPR034750 -
Cpe07g00203 542 Gene3D - 365 429 - -
Cpe07g00203 542 MobiDBLite consensus disorder prediction 304 318 - -
Cpe07g00203 542 MobiDBLite consensus disorder prediction 237 338 - -
Cpe07g00203 542 Gene3D - 69 197 IPR046336 -
Cpe07g00203 542 PANTHER BNAA09G40760D PROTEIN 1 538 - -
Cpe07g00203 542 Pfam Yippee zinc-binding/DNA-binding /Mis18, centromere assembly 436 535 IPR004910 -
Cpe07g00203 542 CDD CRBN_C_like 437 537 IPR034750 -
Cpe07g00203 542 SUPERFAMILY PUA domain-like 88 432 IPR015947 -
Cpe07g00203 542 ProSiteProfiles Lon N-terminal domain profile. 89 433 IPR003111 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00203 K11793 CRBN; cereblon - csv:101218954 972.23
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe11g00509 Cpe-Chr11:2981710 Cpe07g00203 Cpe-Chr7:1302356 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g8 . . . . . . . . . . . . . Car12g00223 Sed01g1255 Cpe07g00203 . Bhi04g00871 Tan02g2544 Cmetu03g1530 . . . Lcy13g1434 . . . . . . . . . . . . . . . . Blo18g00311 Bda01g00940 . . . . . . . . . Cma12g00240 . . . . . . . . . . . Cla08g01207 Cam08g1669 Cec08g1247 Cco08g1364 Clacu08g1366 . Cre08g1151 . Csa02g02252 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009150 1 2 1 0 1 1 2 1 1 0 1 1 2 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe07g00203 Cpe_Chr07 FPKM 25.388611 28.039318 41.216652 40.60796 21.674599 19.552801 21.291901 49.440552 52.910847 49.916714