Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00204 ATGGAGGGTGCAATGAAGAAGACGATGAGTAATGGTAGTGTTCATATGGAGATTGAAGAAATTGACAATAAGTACGAGGAAGCTTATGGGGAACATAATGCCACTGAAGATCAGCTCATTACTCCTTGGACTGTCTCTGTTGCTAGTGGCTATTCGTTGTTGCGTGATCCAATCTATAACAAAGGGCTTGCTTTTACTGAGAAAGAGAGGGATGCTCATTACTTGCGTGGTTTGTTGCCACCAGCACTTCTTAATCAAGAGCTTCAGGAAAGGAGGATGATGCACAATCTTCGCAACTATGAAGTTCCATTACACAGATATATTGCCATGATGGATCTTCAGGAGAGAAACGAAAGGCTGTTCTACAAGCTTCTGATCGATAACGTCGAAGAACTGCTTCCCGTCGTCTACACTCCGACCGTCGGCGAAGCTTGCCAGAAGTATGGAAGCATTTACAGGCGACCTCAAGGCCTTTTCATCAGTTTAAAAGAGAAGGGAAAGATTCTTGAAGTGTTGAAGAACTGGCCCGAAAGGAACATTCAAGTTATTGTTGTGACCGACGGTGAGCGGATTCTCGGCCTCGGGGATCTCGGATGCCAGGGCATGGGGATTCCTGTGGGGAAGCTCTCGTTGTATACAGCGCTCGGAGGAATCCGACCCTCGGCTTGCTTGCCTATCACCATCGACGTCGGTACGAACAATGAGCAGCTTTTGAACGATGAGTTTTACATCGGCCTTCGACATAAACGTGCTAGAGGACAGGAGTACATGGAGCTTTTGGATGAGTTCATGTATGCAGTAAAGAAGAACTATGGAGAGAAAGTGTTGATTCAGTTTGAAGATTTTGCTAACCACAATGCGTTCGAGTTGCTTTCGAGATATAGCTCGTCACACCTCGTGTTTAACGATGACATTCAGGGTACGGCATCTGTCGTCGTAGCGGGACTTCTTTCAGCTCTTAAACTTGTTGGAGGGACATTAGCTGACCATACTTTCCTGTTCCTTGGAGCTGGAGAGACCCAAGCTCCAGTTGAAGAGACTCGCAAGAAGATTTGGCTTGTGGACTCAAAGGCAATCAAGCCAACAGTGTTGATAGGAACATCTGGTGTTGGAAAGACATTTACAAAGGAAGTTGTGGAGGCCATGGCATCCCTCAATGAGAAACCACTTATCCTTGCACTCTCGAACCCGACGTCACAATCGGAGTGTACCGCCGAAGAAGCTTATACATGGAGCCAGGGTCGGGCGATCTTCGCCAGTGGAAGTCCATTTGACCCTGTTGAATATGATGGGAAAGTTTATGTGCCTGGCCAGGCCAACAATGCTTACATATTCCCTGGATTTGGCTTGGGACTGATCATGTCGGGTACTATTCGCGTGCACGACGACATGCTCTTGGCAGCCTCGGAGGCATTGGCTGCCCAAGTGAGTGAAGAAAACTATGAGAAGGGTTTGATTTACCCTCCCTTTACCAACATCAGAAAGATATCAGCTAACATTGCTGCTAAAGTTGCTGCTAAAGCCTATGAACTTGGTCTGGCTTCTCGTCTTCCTCGACCGAAGGATCTCGTAAAGTTTGCCGAGAGCTGCATGTACAGCCCCGGCTACCGTAGCTACCTTTAA 1623 47.32 MEGAMKKTMSNGSVHMEIEEIDNKYEEAYGEHNATEDQLITPWTVSVASGYSLLRDPIYNKGLAFTEKERDAHYLRGLLPPALLNQELQERRMMHNLRNYEVPLHRYIAMMDLQERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIYRRPQGLFISLKEKGKILEVLKNWPERNIQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYTALGGIRPSACLPITIDVGTNNEQLLNDEFYIGLRHKRARGQEYMELLDEFMYAVKKNYGEKVLIQFEDFANHNAFELLSRYSSSHLVFNDDIQGTASVVVAGLLSALKLVGGTLADHTFLFLGAGETQAPVEETRKKIWLVDSKAIKPTVLIGTSGVGKTFTKEVVEAMASLNEKPLILALSNPTSQSECTAEEAYTWSQGRAIFASGSPFDPVEYDGKVYVPGQANNAYIFPGFGLGLIMSGTIRVHDDMLLAASEALAAQVSEENYEKGLIYPPFTNIRKISANIAAKVAAKAYELGLASRLPRPKDLVKFAESCMYSPGYRSYL 540
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1308199 1314853 - Cp4.1LG07g02400.1 Cpe07g00204 472011

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00204 540 ProSitePatterns Malic enzymes signature. 301 317 IPR015884 GO:0004471
Cpe07g00204 540 Gene3D - 358 540 - -
Cpe07g00204 540 PIRSF ME 343 540 IPR001891 GO:0004470|GO:0004471
Cpe07g00204 540 PIRSF ME 14 358 IPR001891 GO:0004470|GO:0004471
Cpe07g00204 540 SMART Malic_M_2 305 509 IPR012302 GO:0051287
Cpe07g00204 540 Gene3D - 303 357 - -
Cpe07g00204 540 Gene3D - 48 302 IPR037062 GO:0004471
Cpe07g00204 540 PRINTS Malic enzyme signature 120 144 IPR001891 GO:0004470|GO:0004471
Cpe07g00204 540 PRINTS Malic enzyme signature 216 238 IPR001891 GO:0004470|GO:0004471
Cpe07g00204 540 PRINTS Malic enzyme signature 276 294 IPR001891 GO:0004470|GO:0004471
Cpe07g00204 540 PRINTS Malic enzyme signature 301 317 IPR001891 GO:0004470|GO:0004471
Cpe07g00204 540 PRINTS Malic enzyme signature 332 348 IPR001891 GO:0004470|GO:0004471
Cpe07g00204 540 PRINTS Malic enzyme signature 180 209 IPR001891 GO:0004470|GO:0004471
Cpe07g00204 540 SMART malic_2 114 295 IPR012301 GO:0004471
Cpe07g00204 540 Pfam Malic enzyme, NAD binding domain 357 508 IPR012302 GO:0051287
Cpe07g00204 540 Pfam Malic enzyme, NAD binding domain 305 342 IPR012302 GO:0051287
Cpe07g00204 540 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 305 539 IPR036291 -
Cpe07g00204 540 PANTHER MALIC ENZYME 357 539 - -
Cpe07g00204 540 PANTHER MALIC ENZYME-RELATED 357 539 - -
Cpe07g00204 540 Coils Coil 18 38 - -
Cpe07g00204 540 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 26 304 IPR046346 -
Cpe07g00204 540 Pfam Malic enzyme, N-terminal domain 114 294 IPR012301 GO:0004471
Cpe07g00204 540 PANTHER MALIC ENZYME-RELATED 8 358 - -
Cpe07g00204 540 PANTHER MALIC ENZYME 8 358 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00204 K00029 E1.1.1.40, maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40] - csv:101218724 1006.9
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01096 Cpe-Chr3:9038501 Cpe07g00204 Cpe-Chr7:1308199 0 dispersed
Cpe07g00204 Cpe-Chr7:1308199 Cpe18g00402 Cpe-Chr18:5225287 0 dispersed
Cpe11g00510 Cpe-Chr11:2987681 Cpe07g00204 Cpe-Chr7:1308199 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g7 . . . . . . . . . . . . . Car12g00224 . Cpe07g00204 . Bhi04g00869 Tan06g0248 . . Hepe10g0379 . Lcy13g1433 . . . . . . . . . . . . . . . Blo17g00302 . . Bda13g01324 . . . Bma02g00080 . . . . Cma12g00241 . . . . . . . . . . . Cla08g01208 Cam08g1670 Cec08g1248 Cco08g1365 Clacu08g1367 . Cre08g1152 . Csa02g02253 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000336 4 5 1 2 4 4 7 4 4 4 4 4 7 4 3 7 4 5 8 4 4 4 4 4 2 4 4 7 9 4 135
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe07g00204 Cpe_Chr07 FPKM 22.817865 25.871889 23.680635 24.881168 38.728874 34.481422 38.865471 31.940496 28.524944 28.685394