Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00205 ATGGCTTCTGTGGATTTGGAGAATTTTGATGAGAGGTCACAAGAGAAGGAAGCAGCACATGCATCTATGAAGAAGACTGGGGTCGCCACCGCACTACCTGATGCAATTGTCGCTTGTCGACATTGTTATGCTTCTTCTTCATGTGGTTTCCCAACGATTTTCTCAGATGGAATGGCAGATCCTGCTAGCTATGGGAATTATGAGCGTGACATTGAGCAAGCACTTATCATTTTGAAAAAAGGAAGTCAACTAATCAAGTATAGCCGAAAAGGAAAGCCGAAGCTCTGCCCATTCAGAATCTCTACTGACGAAACCACGCTGATCTGGTATTCACATGGAGAAGAAAGGACCTTGAAATTATCTAGCATCTCACGAATTATCCCAGGACAAAGAACTGCTGTATTCAGAAGGTATTTGAGGCCTGAAAAGGAATACTTATCATTTTCATTGTTGTATAGAAACGGGGAACGGTCACTTGATTTGATCTGCAAGGACAAAGGTGAAGCTGAAGTCTGGCTTGTTGGCCTTAAGAATTTAATTTCTTCAAGATTACAGCATGGACGTTCTAGGAGTGATTTGCCAGATTTGCAGGATGCTAGTGAGTTCTTTCAAAGTGGTCGAAATTTTGGTGCAACCTTAGAATTTAGTAACAGCTTAGCTCGGGGAAGGGATTCTATTGATTTAAATTCTCGTGAATCTTCATTGCATCTGGTAAGTTCAGATGTGGGTTCAGAACGTGCAAATATGCAACGAAGTGGTGGAGATGGTTTCCGCATCAGTGTATCAAGCACTCCTAGTTGTTCAAGTGGAGGATCTGGACCAGATGATATAGAGTCATTGGGTGATGTTTATGTCTGGGGTGGGATTTGGTCTGATTTAGTTTTACCCGATGGAACTTCAAGTCCAATACCAGTAAAAAATGATGTGCTGATTCCAAAGCCATTAGAGACAAATGTTGTTCTTGATGTTCATCAGATTGCTTGCGGTGTCCGACACATTGCTCTCGTAACGAGGCAAGGTGAGGTTTTCACATGGGGTGAAGAATGTGGGGGACGGCTCGGTCATGGAGTTGATAGAGACTTTAGTCGCCCCCGTCTTGTTGAGTTTCTGGCAGTTAGTAATGTAGACTTTGTAGCTTGTGGTGAGTATCATTCATGTGCCATAACCTCTTCAAATGATTTATTCTCTTGGGGTGATGGAATATTTAGTTCTGGAATTCTTGGTCATGGCACTGATGTTAGTCACTGGATACCCAAAAGAGTTGTCGGTCCTTTGGAAGGGCTTCAAGTTTTATCTGTTGCATGTGGCACGTGGCATTCAGCACTAGCAACTTCCAACGGAAAACTATACACATTTGGTGATGGAACATATGGTGTACTGGGCCATGGAGATAGGGAGAGTATTGCATATCCAAGAGAGGTGCAATTATTGAGTGGACTTAGGACCATTAAAGTTGCTTGTGGAATCTGGCATACTGCTGCTATTGTTGAGGTTATGGGTCAGACTGGTTCAAACATGTCATCTAGAAAGTTGTTCACTTGGGGTGATGGTGACAAATACCGTTTGGGTCATGGAAACAAGGAAACTTATCTTCTTCCTACTTGTGTTTCTTCACTCATAGACTACAATTTCCACCAGTTAGCATGTGGACACAACATGACTGTGGCTCTTACCACATCGGGTCATGTGTTTACCATGGGTGGTACTGCATATGGTCAGCTTGGCAATCCAAGTTCAGATGGAGTTATTCCTTGCTTAGTGCAGGATAGATTAGTTGGTGAATTTGTTGAAGAAATTTCTTGCGGTGCAAGTCACACAGTTGTTCTCACATCAAGAAATGAAGTGTTTTCTTGGGGCAGGGGTGCCAATGGAAGATTGGGACATGGAGATGTAGAGGATAGGAGATCCCCAACACTCGTGGAAGCTCTGAAGGACCGGCATGTTAAAAGTATATCTTGTGGTTCAAACTTTACTGCAAGTATATGTATTCATAAGTGGGTTAGCGGAGCAGATCAGTCAGTTTGCACTGGTTGTCGTCAAGCATTTGGTTTCACAAAGAAGAGGCACAATTGTTATAACTGTGGGCTGGTGCATTGTCATTCATGCAGCTCCAAGAAAGCTTTGAAAGCAGCATTGGCACCTACCCCTGGCAAACCACACCGAGTATGTGATTCTTGCTATGCAAAACTTAAAGCTGCTGAGGCTGGCAACAATTTGGCTATAAATAGAAAATTGACGGCCAGTCGTCATTCAACAGATTATAAGGAAAGATTTGATAGGGTGGAGGTGAGAACTTCTCGCGTTCTATTGTCTCCCACCACAGAACCTGTTAAATATCATGAGATTAAATCAGTAAAACCAGGGAGTAGACCATCTTCTCCTTCTATGGTCAGAGCTTCTCAGGTGCCATCTCTTCAGCAACTGAAAGACATTGCATTTCCAAGTTCGTTGAGTGCTATTCAAAATGCTTGGAGGCCCGCAACTGTGGCACCAGCATCACCACCTCCAATGTGCAATTCAAGACCTGTATCACCATATTCAAGGAGGCCAAGCCCTCCACGTTCATCTACTCCAGGATTTTCGAAGACTGTTATTGATAGTCTCAAGAGGTCAAATGAGACTCTCAGGAAGTCAAATGAGACATTGACTCAAGAAAATTCAAGGCTTGAACGCCAGGCATTAACTCTTGATACTCAAGATACAGAAATTCGAAATTTGTGCAAAAATGTAAGTGAAGTGGCTTCATTAGTTGAAGAAGAATCCTCCAGGTGCAAAATAGCAAAGAAATTAGTTACTACAATTACAGACCAGTTGAAGGAAATGACTGAGAAACTGCCACCTGAGATATCTGATGGTGAAACTTTTAAGGCAATGTATGCCCAAGCTGAAGCTTTCTTAAATATGGTTGAGACATCGAAAACTTCATCTTTGCCTACGAGTCGTGAAAAATCTGACACACCCAATAATGGATCTACTCCCTCACTTGCTGATTCTTCAAAGAGGCTAGAAGACGATTTAGTCACTTCAGGAATGAAGGACTTAACGCAGGTTAATGTAAATAATCTTCTGGAAAGTAAGAAAACTTCTGCAAGGGAGGCAGTTTCTCAAAGTACAGAAAATGGCTCTAGATCTCCATTATCTTCAACACCCCCAACTGGAAGCGAAAAGCAAGTTATTGAGCAATTTGAACCTGGAGTTTATGTAACTTTGGTCGTGCTTTCAAATGATACCAAGATTTTCAAACGCGTTAGATTCAGCAAGAGAAAGTTTGATGAGCAGCAAGCAGAAGACTGGTGGAGTAAAAACAAAGACAGGCTGCTTAAGAGATATAACCCATCAACAAGCTACTCTACGCCAACCGGTTCACCTAAAATTCAATCCTCTGCAGAGGAAAGTAATGAAGCTCCAACAACTCCCAAACTGGATGTATAG 3432 42.37 MASVDLENFDERSQEKEAAHASMKKTGVATALPDAIVACRHCYASSSCGFPTIFSDGMADPASYGNYERDIEQALIILKKGSQLIKYSRKGKPKLCPFRISTDETTLIWYSHGEERTLKLSSISRIIPGQRTAVFRRYLRPEKEYLSFSLLYRNGERSLDLICKDKGEAEVWLVGLKNLISSRLQHGRSRSDLPDLQDASEFFQSGRNFGATLEFSNSLARGRDSIDLNSRESSLHLVSSDVGSERANMQRSGGDGFRISVSSTPSCSSGGSGPDDIESLGDVYVWGGIWSDLVLPDGTSSPIPVKNDVLIPKPLETNVVLDVHQIACGVRHIALVTRQGEVFTWGEECGGRLGHGVDRDFSRPRLVEFLAVSNVDFVACGEYHSCAITSSNDLFSWGDGIFSSGILGHGTDVSHWIPKRVVGPLEGLQVLSVACGTWHSALATSNGKLYTFGDGTYGVLGHGDRESIAYPREVQLLSGLRTIKVACGIWHTAAIVEVMGQTGSNMSSRKLFTWGDGDKYRLGHGNKETYLLPTCVSSLIDYNFHQLACGHNMTVALTTSGHVFTMGGTAYGQLGNPSSDGVIPCLVQDRLVGEFVEEISCGASHTVVLTSRNEVFSWGRGANGRLGHGDVEDRRSPTLVEALKDRHVKSISCGSNFTASICIHKWVSGADQSVCTGCRQAFGFTKKRHNCYNCGLVHCHSCSSKKALKAALAPTPGKPHRVCDSCYAKLKAAEAGNNLAINRKLTASRHSTDYKERFDRVEVRTSRVLLSPTTEPVKYHEIKSVKPGSRPSSPSMVRASQVPSLQQLKDIAFPSSLSAIQNAWRPATVAPASPPPMCNSRPVSPYSRRPSPPRSSTPGFSKTVIDSLKRSNETLRKSNETLTQENSRLERQALTLDTQDTEIRNLCKNVSEVASLVEEESSRCKIAKKLVTTITDQLKEMTEKLPPEISDGETFKAMYAQAEAFLNMVETSKTSSLPTSREKSDTPNNGSTPSLADSSKRLEDDLVTSGMKDLTQVNVNNLLESKKTSAREAVSQSTENGSRSPLSSTPPTGSEKQVIEQFEPGVYVTLVVLSNDTKIFKRVRFSKRKFDEQQAEDWWSKNKDRLLKRYNPSTSYSTPTGSPKIQSSAEESNEAPTTPKLDV 1143
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1319496 1326267 + Cp4.1LG07g02440.1 Cpe07g00205 472012

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00205 1143 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 561 612 IPR000408 -
Cpe07g00205 1143 Pfam Transcription factor BRX N-terminal domain 919 954 IPR027988 -
Cpe07g00205 1143 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 663 743 IPR013083 -
Cpe07g00205 1143 PRINTS Chromosome condensation regulator RCC1 signature 550 568 IPR000408 -
Cpe07g00205 1143 PRINTS Chromosome condensation regulator RCC1 signature 433 449 IPR000408 -
Cpe07g00205 1143 PRINTS Chromosome condensation regulator RCC1 signature 608 629 IPR000408 -
Cpe07g00205 1143 PRINTS Chromosome condensation regulator RCC1 signature 342 358 IPR000408 -
Cpe07g00205 1143 PRINTS Chromosome condensation regulator RCC1 signature 449 463 IPR000408 -
Cpe07g00205 1143 PRINTS Chromosome condensation regulator RCC1 signature 392 408 IPR000408 -
Cpe07g00205 1143 Gene3D - 276 401 IPR009091 -
Cpe07g00205 1143 Pfam FYVE zinc finger 665 731 IPR000306 GO:0046872
Cpe07g00205 1143 Coils Coil 865 899 - -
Cpe07g00205 1143 MobiDBLite consensus disorder prediction 1109 1135 - -
Cpe07g00205 1143 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 509 560 IPR000408 -
Cpe07g00205 1143 MobiDBLite consensus disorder prediction 1 23 - -
Cpe07g00205 1143 MobiDBLite consensus disorder prediction 8 22 - -
Cpe07g00205 1143 CDD FYVE_like_SF 675 727 - -
Cpe07g00205 1143 MobiDBLite consensus disorder prediction 972 1001 - -
Cpe07g00205 1143 MobiDBLite consensus disorder prediction 1023 1056 - -
Cpe07g00205 1143 Pfam Regulator of chromosome condensation (RCC1) repeat 446 495 IPR000408 -
Cpe07g00205 1143 Pfam Regulator of chromosome condensation (RCC1) repeat 393 442 IPR000408 -
Cpe07g00205 1143 Pfam Regulator of chromosome condensation (RCC1) repeat 340 388 IPR000408 -
Cpe07g00205 1143 Pfam Regulator of chromosome condensation (RCC1) repeat 511 557 IPR000408 -
Cpe07g00205 1143 Pfam Regulator of chromosome condensation (RCC1) repeat 560 609 IPR000408 -
Cpe07g00205 1143 Pfam Regulator of chromosome condensation (RCC1) repeat 614 660 IPR000408 -
Cpe07g00205 1143 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 599 609 IPR000408 -
Cpe07g00205 1143 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 326 336 IPR000408 -
Cpe07g00205 1143 SMART fyve_4 663 732 IPR000306 GO:0046872
Cpe07g00205 1143 SUPERFAMILY FYVE/PHD zinc finger 665 733 IPR011011 -
Cpe07g00205 1143 Gene3D - 70 187 IPR011993 -
Cpe07g00205 1143 MobiDBLite consensus disorder prediction 782 801 - -
Cpe07g00205 1143 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 669 731 IPR017455 -
Cpe07g00205 1143 Pfam Transcription factor regulating root and shoot growth via Pin3 1055 1110 IPR013591 -
Cpe07g00205 1143 SUPERFAMILY PH domain-like 70 180 - -
Cpe07g00205 1143 MobiDBLite consensus disorder prediction 972 997 - -
Cpe07g00205 1143 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY WITH FYVE ZINC FINGER DOMAIN-CONTAINING PROTEIN 71 1110 - -
Cpe07g00205 1143 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 613 664 IPR000408 -
Cpe07g00205 1143 Gene3D - 402 662 IPR009091 -
Cpe07g00205 1143 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 485 495 IPR000408 -
Cpe07g00205 1143 MobiDBLite consensus disorder prediction 1109 1143 - -
Cpe07g00205 1143 SUPERFAMILY RCC1/BLIP-II 280 666 IPR009091 -
Cpe07g00205 1143 MobiDBLite consensus disorder prediction 829 852 - -
Cpe07g00205 1143 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 392 446 IPR000408 -
Cpe07g00205 1143 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 340 391 IPR000408 -
Cpe07g00205 1143 MobiDBLite consensus disorder prediction 828 863 - -
Cpe07g00205 1143 ProSiteProfiles BRX domain profile. 1056 1111 IPR013591 -
Cpe07g00205 1143 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 447 498 IPR000408 -
Cpe07g00205 1143 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 71 1110 - -
Cpe07g00205 1143 CDD PH_PLC_plant-like 69 181 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00205 - - - csv:101220986 1809.27
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00205 Cpe-Chr7:1319496 Cpe18g00305 Cpe-Chr18:4611079 0 dispersed
Cpe07g00205 Cpe-Chr7:1319496 Cpe07g00211 Cpe-Chr7:1352910 4.57E-06 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g891 . . . Bda11g01223 Bpe13g01417 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g01223 . . . . . . . . . . . . Cpe07g00205 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005381 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 6 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe07g00205 Cpe_Chr07 FPKM 0.0 0.0 10.311491 11.367941 16.220911 19.003658 16.332201 0.0 0.177312 0.130859