Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00206 ATGCAAAAGCTAGAGCTCATCACCGGAGTCAAAGTCAAACCCGACGAGCCACCTCAATCCCAGCACCCAACCACCGCGCCCTCCGCCGTCTCCGCCGCCTCTCACGGCCGAAATGCAGCAGCTGCGATCTTCAAACCCGACATTGTAGCGGTTCCGGCGAAGGCCCGGAGCAAACGCTCACGCATCATCCCATCAAATTGGAACAACTCCCGCCTCCTCCCACTTTCTCCGACCAGCTCCTCCTCCGAGCTAGACATCCCGGCCACCGAACCGCCACCGCACCCGGTTAAGAAAGTCCCTCCAAAAGTGGCGGCGACGGCGACGGCGACGGCGGCGGTGAAGAAAAAAGAATCCTCCTCCTCATCGGAGACCGGAATGTCGGCTGGAGAAGGGCGGAAGTGTATGCACTGTGCCACTGACAAGACGCCGCAGTGGCGGACGGGCCCAATGGGCCCAAAGACGCTTTGTAACGCTTGTGGGGTCCGCTACAAATCCGGGCGGCTGGTGCCGGAATACCGGCCGGCGGCGAGCCCGACATTTGTGCTGACAAAACACTCGAATTCTCACCGGAAAGTGTTGGAGCTTCGACGGCAAAAGGAACTGCAGAAAGCGCAGGAACAGCAGGCGTTGATGATGGATCATCATCACCATCATCACCATCAGGAAATGATGTTTGATTCATCCAACGGTGAGGATTATCTGATGAAGCAAAACGTGGCTCATGATTACCTGCACCTGATCTGA 744 57.66 MQKLELITGVKVKPDEPPQSQHPTTAPSAVSAASHGRNAAAAIFKPDIVAVPAKARSKRSRIIPSNWNNSRLLPLSPTSSSSELDIPATEPPPHPVKKVPPKVAATATATAAVKKKESSSSSETGMSAGEGRKCMHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKELQKAQEQQALMMDHHHHHHHQEMMFDSSNGEDYLMKQNVAHDYLHLI 247
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1328410 1329153 - Cp4.1LG07g02390.1 Cpe07g00206 472013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00206 247 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 130 192 - -
Cpe07g00206 247 PANTHER GATA TRANSCRIPTION FACTOR 1 247 - -
Cpe07g00206 247 Pfam GATA zinc finger 134 167 IPR000679 GO:0006355|GO:0043565
Cpe07g00206 247 Gene3D - 126 209 IPR013088 GO:0006355|GO:0008270
Cpe07g00206 247 CDD ZnF_GATA 133 180 IPR000679 GO:0006355|GO:0043565
Cpe07g00206 247 MobiDBLite consensus disorder prediction 50 130 - -
Cpe07g00206 247 ProSiteProfiles GATA-type zinc finger domain profile. 128 164 IPR000679 GO:0006355|GO:0043565
Cpe07g00206 247 MobiDBLite consensus disorder prediction 61 86 - -
Cpe07g00206 247 MobiDBLite consensus disorder prediction 1 36 - -
Cpe07g00206 247 MobiDBLite consensus disorder prediction 112 127 - -
Cpe07g00206 247 MobiDBLite consensus disorder prediction 18 32 - -
Cpe07g00206 247 ProSitePatterns GATA-type zinc finger domain. 134 159 IPR000679 GO:0006355|GO:0043565
Cpe07g00206 247 PANTHER GATA TRANSCRIPTION FACTOR 1 247 - -
Cpe07g00206 247 SMART GATA_3 128 178 IPR000679 GO:0006355|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe07g00206 Cpe11g00511 CCT
Cpe07g00206 Cpe11g00511 ECH
Cpe06g00489 Cpe07g00206 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00206 Cpe-Chr7:1328410 Cpe17g00539 Cpe-Chr17:4491655 1.57E-49 dispersed
Cpe11g00511 Cpe-Chr11:2998527 Cpe07g00206 Cpe-Chr7:1328410 2.59E-75 wgd
Cpe06g00489 Cpe-Chr6:2895941 Cpe07g00206 Cpe-Chr7:1328410 3.48E-54 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49718 PF00320 GATA 1.10E-15 CL0167 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00206 - - cpep:111799217 392.504